Plant FIBer expression Database

Potri.001G172500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49890 156 / 2e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011541
[exp]
154 / 1e-46 AT3G49890 180 / 6e-57 unknown protein
Lus10019282
[exp]
126 / 2e-35 AT3G49890 166 / 9e-51 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G172500.2 pacid=42788894 polypeptide=Potri.001G172500.2.p locus=Potri.001G172500 ID=Potri.001G172500.2.v4.1 annot-version=v4.1
ATGGGAGGTCCAGCTAGCAGCAGCAGCAGCAGCAGCGAAGAGGAAGATGCAAATTGGAAAGCAGCTATCGAATCAATAGCTGCAACTACCACTTTTGCTA
ACAAGGTTCTTAGCAGTACTTCTAATGGCTCAACGTCCCGTTCAGCACCCACTACAGAAGCTTATGCAGAGAACTCCCAGGATTCTCGAAAGCTCAAGCA
CTACCAAATTAAGGCGCAAAAGTGTTTGGATATCATCTTGGAAAGGACTCTAGAGATGGTTAGAGATCCTGTCTCAGATAATGATCTAGATGCAAACGAT
GTTGGGGTAAGGTTGTTTAAGCATTCTCCTGCTGGAATTGTATTTGACCATTTAGATGAAATTCAAGGGCCAAGAAAGAGACCACGAATCCTACCGGGAC
ACGGTATTGATGAAAAATCGAAGAAGTTTAGGCATCAAATCCAGTCCATTGCTGTTGATGGGGCAGACATAATTTCTGAAGCAAGGGATGCAGAGCGAAA
ATCATTAGCTCAATTAGAAGCTAAAGAAGCAAAAGCAAAAGCCAAAGCCAAAAAGGAGGAAGAAAGAGTTGTAGAATTGAAACGGATCAGGGGGGAGAGA
TGGCTACCTTCTATTGCCAGGGAAATGCAGGTTCCAAGCAAAAAGATGAAAACCATAATCAAGGTTTGGGCAATCAATGAACTGGGAGTCATCAACATGA
ACTAA
AA sequence
>Potri.001G172500.2 pacid=42788894 polypeptide=Potri.001G172500.2.p locus=Potri.001G172500 ID=Potri.001G172500.2.v4.1 annot-version=v4.1
MGGPASSSSSSSEEEDANWKAAIESIAATTTFANKVLSSTSNGSTSRSAPTTEAYAENSQDSRKLKHYQIKAQKCLDIILERTLEMVRDPVSDNDLDAND
VGVRLFKHSPAGIVFDHLDEIQGPRKRPRILPGHGIDEKSKKFRHQIQSIAVDGADIISEARDAERKSLAQLEAKEAKAKAKAKKEEERVVELKRIRGER
WLPSIAREMQVPSKKMKTIIKVWAINELGVINMN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49890 unknown protein Potri.001G172500
[exp]
0 1
AT4G02930 GTP binding Elongation factor ... Potri.002G215900
[exp]
1.41 0.9055 Pt-TUFA.3
AT3G23370 RNA-binding (RRM/RBD/RNP motif... Potri.010G070001
[exp]
1.73 0.8951
AT1G45332 Translation elongation factor ... Potri.001G123600
[exp]
2.82 0.8986
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Potri.002G198600
[exp]
4.47 0.8812
AT3G27550 RNA-binding CRS1 / YhbY (CRM) ... Potri.001G343700
[exp]
4.89 0.8940
AT2G31060 EMB2785 EMBRYO DEFECTIVE 2785, elongat... Potri.013G123700
[exp]
7.48 0.8336
AT1G15420 unknown protein Potri.001G173300
[exp]
8.24 0.8434
AT1G61870 PPR336 pentatricopeptide repeat 336 (... Potri.004G018000
[exp]
8.36 0.8468
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.006G039600
[exp]
8.48 0.8635
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G120900
[exp]
10.19 0.8655

Potri.001G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.