Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) AT1G52670 231 / 1e-75 Single hybrid motif superfamily protein (.1) AT3G56130 139 / 1e-39 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT5G16390 51 / 2e-07 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) AT5G15530 51 / 2e-07 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061400 [exp] 400 / 2e-141 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2) Potri.008G074100 [exp] 130 / 2e-36 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 127 / 4e-35 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.017G092500 [exp] 49 / 8e-07 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.004G119000 [exp] 46 / 9e-06 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1) Potri.019G054400 [exp] 45 / 2e-05 AT5G16390 117 / 5e-31 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011480 [exp] 221 / 1e-71 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10023118 [exp] 220 / 5e-71 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2) Lus10040959 [exp] 130 / 2e-35 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10009843 [exp] 127 / 8e-35 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10017424 [exp] 121 / 6e-33 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10010226 [exp] 121 / 7e-33 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10020619 [exp] 46 / 1e-05 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Lus10004868 [exp] 44 / 6e-05 AT5G16390 212 / 2e-67 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [poplar] [flax] Hybrid PF00364 [poplar] [flax] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G172600.2 pacid=42793431 polypeptide=Potri.001G172600.2.p locus=Potri.001G172600 ID=Potri.001G172600.2.v4.1 annot-version=v4.1 ATGGCTTCTTGTAGCTTAGGAGCTTCAAATATGAAGCTCTCAAAGTTGGATTTTGGTAGAGCAACAGTTGTTAATCTACAGAAACAAAGTGGTTTAATAG CGTGGAGGGGTAGGGGACGACTGCAACATGCAGGTGTGGCTATCTCACATAAATCAAGAGAAGCATTCAGGTGTCGTGGTTCAGCTTCGGAAACTGAGTT GACTACTAAAGAGACCAAATCATCAGGTTTGACAAGCCAACTTATTCCAAATTCATCTGAGATCGAATCCCTGGTCACTGAAATATGCAATACAACCTCG GTAGCAGAGTTAGAATTGAAACTTTGTGGGTTTCGGCTATATGTGAGGAGGGATTTAACTGAAAAAAATAAAGATACACATCAACCCCTGCCTGCTCCTC CTGCTTCTCTTGCTGTCACTGTGAAAACAACTACTGATGCATCTGATCTCAATGGGTCCGTTTCTACATCTTTAGCTATCTCCAAACAAGAGCCTTCTTC AGGGGGGATTATATCATTTCTTGATAGAGCTGCTGATGAAGGCTTAATGATACTGCAGTCTCCAAGGGTGGGGTTTTTCCGGAGATCTCGAACCATAAAG GGAAAGCGTGCACCCCCATCGTGTAAAGAGAAGCAAATAGTAAAGGAGGGTCAAGTGCTATGCTTCATCGAACAGCTTGGTGGTGAACTCCCAATTGAGA CTGACATATCTGGGGAAGTCATCAGAATACTGCGAGAGGATGGTGAACCTGTTGGATATGGTGATGCATTGATTGCAATTCTCCCATCATTTCCTGGGAT AAAGAAGCTTCAGTAG
AA sequence Show only first row Show all	>Potri.001G172600.2 pacid=42793431 polypeptide=Potri.001G172600.2.p locus=Potri.001G172600 ID=Potri.001G172600.2.v4.1 annot-version=v4.1 MASCSLGASNMKLSKLDFGRATVVNLQKQSGLIAWRGRGRLQHAGVAISHKSREAFRCRGSASETELTTKETKSSGLTSQLIPNSSEIESLVTEICNTTS VAELELKLCGFRLYVRRDLTEKNKDTHQPLPAPPASLAVTVKTTTDASDLNGSVSTSLAISKQEPSSGGIISFLDRAADEGLMILQSPRVGFFRRSRTIK GKRAPPSCKEKQIVKEGQVLCFIEQLGGELPIETDISGEVIRILREDGEPVGYGDALIAILPSFPGIKKLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	2.00	0.8173
AT5G64460			Phosphoglycerate mutase family...		Potri.001G286000 [exp]	3.46	0.8157
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Potri.007G001500 [exp]	3.87	0.7855
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	4.47	0.7859
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	5.29	0.7683
AT1G34630			unknown protein		Potri.002G096500 [exp]	7.34	0.7350
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	7.74	0.7770
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	9.32	0.8306
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	15.49	0.7662
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	17.54	0.7590

Compare expression of checked genes

Potri.001G172600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.