Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80210 484 / 2e-170 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 478 / 4e-168 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT1G71230 44 / 0.0002 CSN5B, AJH2 COP9-signalosome 5B (.1) AT5G23540 43 / 0.0002 Mov34/MPN/PAD-1 family protein (.1.2) AT1G22920 43 / 0.0003 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275100 [exp] 45 / 9e-05 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.018G006100 [exp] 44 / 0.0001 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.014G032900 [exp] 42 / 0.0006 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.002G127900 [exp] 42 / 0.0006 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030352 [exp] 277 / 7e-91 AT1G80210 232 / 3e-74 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Lus10007893 [exp] 258 / 7e-82 AT1G80210 240 / 4e-76 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 45 / 0.0002 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10026947 [exp] 44 / 0.0002 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10021746 [exp] 44 / 0.0002 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 44 / 0.0002 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 42 / 0.0006 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 42 / 0.0008 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Potri.001G172800.3 pacid=42793304 polypeptide=Potri.001G172800.3.p locus=Potri.001G172800 ID=Potri.001G172800.3.v4.1 annot-version=v4.1 ATGTCTTTAACGAGCGTGAAGATGACAGAGGAAGTCTGGTTAACATGTCTCACCCATGCGTTGTCTACCGAGACCGAAGAAATCCTTGGCCTCCTCCTCG GTGATATTGAGGTGTTCTGTGAATGTGTTACATGGAAAACGGAATTGTGGCACTTCAGGTATGCGAAAGATGGCAATGTTACTGCATTAATATGGGGAGC CTCACCTCAGTCAAGATCTGATAGGAGAAAGGACCGGGTAGAGACAAAACCAGAACAGTTGGCTGCAGCATCAGCTCAAGCTGAGAGAATGACTGCATCA ACAGGACGAACAACAAGAGTGATAGGGTGGTATCATTCACACCCGCATATTACTGTACTTCCTTCTCATGTTGATGTGAGGACCCAGGCAATGTACCAAC TTCTAGATCCTGGGTTTATCGGCCTGATATTTTCCTGTTTTAATGAGGATGTCAATAAGGTTGGAAGAATCCAAGTCATTGCTTTCCAGTCCTCAGATGG GAAACAGAATAACATGTTAAGACCTGTTTCTGCATTGCCTGTAAATAAAAGTTCAATAATAGAGCTTGATTCATCTTCCTCAGATATTGCAAGTCTGGAG GGCCCTGAACTGGACACTGCTGATTCAAGAGCTGCAGGATCCAGTAAGGGTGGGGCAAGATCTTTGGGTCTTGGGGATTTCTTTGCTAATGCTGATGCCA ACTATGTTGGGAGAGAAAGAATTGGAGGAAACTACTATAGCAGCAATTCAGGTGATAAGATAACTGATATAGACCCCATGGACATGTCAGAGAGTATGCA GGAAGCTATGCACCGCTCAAATTTGGACATGAGTGGTGCGGAGTATTCCAGAAGAGAAATTCCTCTTCATGTTTTGCCCACATGCTCTCTGCTGAAGCTT GATTCACCTCTAATGTCATTTGGTGATTTGCAACGTGTGTTGTATGAAGAGGAGCGTGGAGCATACAACCAAGCCATCTTGCAGAATATGAGGAATGGAA AAGTACATCCCTTGACTTTCATTCACCACACAGCAACATATCAGGCTTCCATGTGCAAATTGATTGAATACTGTCTAAGTCCTGCCATAAATGCTCTCCA GGGCCGCTTGAGAGAGAATGATATTCGGTTAGCAACACTTGCTGATGAAGCCAAGATGTTGGAGATGGAAACCGCTAAAGGGAGTGAGTTACAGATCTCC CCGTCAAGTTCCAGATCTCCCCGTCAAGTTCCATCTCCTGGACTACGAGGAAGTGCTTTGTCTGGTCAGAGGGACTTTCATGGTTCATCAGAATCTCTTA GTTCGAGGACTGTTGCCAGCCCTGGCAGCCGAAGCAGAACAAGCTCCTCATAG
AA sequence Show only first row Show all	>Potri.001G172800.3 pacid=42793304 polypeptide=Potri.001G172800.3.p locus=Potri.001G172800 ID=Potri.001G172800.3.v4.1 annot-version=v4.1 MSLTSVKMTEEVWLTCLTHALSTETEEILGLLLGDIEVFCECVTWKTELWHFRYAKDGNVTALIWGASPQSRSDRRKDRVETKPEQLAAASAQAERMTAS TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDPGFIGLIFSCFNEDVNKVGRIQVIAFQSSDGKQNNMLRPVSALPVNKSSIIELDSSSSDIASLE GPELDTADSRAAGSSKGGARSLGLGDFFANADANYVGRERIGGNYYSSNSGDKITDIDPMDMSESMQEAMHRSNLDMSGAEYSRREIPLHVLPTCSLLKL DSPLMSFGDLQRVLYEEERGAYNQAILQNMRNGKVHPLTFIHHTATYQASMCKLIEYCLSPAINALQGRLRENDIRLATLADEAKMLEMETAKGSELQIS PSSSRSPRQVPSPGLRGSALSGQRDFHGSSESLSSRTVASPGSRSRTSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Potri.001G172800 [exp]	0	1
AT4G15248	CO		B-box type zinc finger family ...		Potri.007G121100 [exp]	3.16	0.9010
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	4.69	0.9235
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	5.09	0.9122	ATEB1.4
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	5.91	0.8996
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	10.95	0.9019
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.008G033200 [exp]	14.86	0.8881
AT5G20600			unknown protein		Potri.012G036500 [exp]	14.96	0.8687
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	15.00	0.8934
AT3G57450			unknown protein		Potri.012G032500 [exp]	15.23	0.8965
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	15.55	0.8911

Compare expression of checked genes

Potri.001G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.