Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52690 59 / 2e-11 LEA7 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT3G15670 49 / 1e-07 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062800 [exp] 46 / 3e-07 AT4G13560 78 / 3e-20 unfertilized embryo sac 15, Late embryogenesis abundant protein (LEA) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007956 [exp] 72 / 1e-16 AT1G52690 80 / 2e-19 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) Lus10013489 [exp] 56 / 2e-10 AT1G52690 82 / 3e-20 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G173200.1 pacid=42793064 polypeptide=Potri.001G173200.1.p locus=Potri.001G173200 ID=Potri.001G173200.1.v4.1 annot-version=v4.1 ATGGCATCTCATGAGCAGAGCTACAGAGCTGGTGAATCCCATGGCCGAGCTGAGGAGAAGACTGGTAGAGTGACTGGTAGCATTAAGGAAAAGGCCAGGG AAGTCAAGGACAAGACATATGAAACAGCCCAACAAGCCAAAGAGAAGGCTGCACAGACGGCTCAAGAGGCCAGAGAAAAGACAGCAGAGACTACCGAGTC TGCCAAGCAGAAGGCCCAGGAAGGCAAGGACAACTCCAAGGGGGTTATGCAGCAAACTGGGGAGAAAGTGATGCAGATGGCTGAGAGCGCTAAGGATACT GTGAAGCAGACTTTGGGGATTGGTGGCCCTGGTGAGGATGAGGATATCTATGCTAGGAAAGATGAGACGGAAGATCCTGCTGGTTATAAGCACACCACTA TCTATAAGGAGACCAAATATTAG
AA sequence Show only first row Show all	>Potri.001G173200.1 pacid=42793064 polypeptide=Potri.001G173200.1.p locus=Potri.001G173200 ID=Potri.001G173200.1.v4.1 annot-version=v4.1 MASHEQSYRAGESHGRAEEKTGRVTGSIKEKAREVKDKTYETAQQAKEKAAQTAQEAREKTAETTESAKQKAQEGKDNSKGVMQQTGEKVMQMAESAKDT VKQTLGIGGPGEDEDIYARKDETEDPAGYKHTTIYKETKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Potri.001G173200 [exp]	0	1
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.002G206100 [exp]	2.23	0.9581
AT2G18540			RmlC-like cupins superfamily p...		Potri.007G029100 [exp]	3.74	0.9323
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	5.83	0.9772
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.001G060900 [exp]	7.74	0.9673
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	9.48	0.9481
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	9.53	0.9467	PtrEXLB1,EXLB1.1
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	9.79	0.9583
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	9.94	0.9185
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G151500 [exp]	10.39	0.8668	EXLB1.2
AT4G31830			unknown protein		Potri.006G183800 [exp]	16.43	0.8838

Compare expression of checked genes

Potri.001G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.