Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15440 1341 / 0 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G11160 96 / 6e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 96 / 7e-20 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G10580 94 / 2e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 89 / 7e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 88 / 1e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 89 / 5e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 89 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 87 / 2e-17 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G41500 85 / 8e-17 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G060500 [exp] 1680 / 0 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.002G051900 [exp] 105 / 1e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 89 / 6e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 92 / 8e-19 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 91 / 1e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 90 / 3e-18 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.019G096900 [exp] 87 / 3e-18 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 89 / 4e-18 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G148500 [exp] 85 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034114 [exp] 1443 / 0 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10043473 [exp] 1134 / 0 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10014674 [exp] 99 / 5e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 95 / 8e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 97 / 2e-20 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 96 / 4e-20 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 93 / 5e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 90 / 5e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 91 / 2e-18 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 87 / 3e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04003 [poplar] [flax] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Potri.001G173500.1 pacid=42791888 polypeptide=Potri.001G173500.1.p locus=Potri.001G173500 ID=Potri.001G173500.1.v4.1 annot-version=v4.1 ATGAATTACAGATTTCATAACCTGCTCGGAGCCCCCTACAGGGGAGGCAACGTTGTGATTACCCAAAACACCCAACTTATCTCACCTGTCGGTAACCGAG TCTCCATCACCGACCTCCTCAAATCCCAAACCATAACCCTTCCACTCCAATCCTCATCCAACATCCGCCGCATCGCCGCCTCCCCCGATGGCACTTTCCT CCTCACAGTCGACGAGAACCACCGCTGCCACTTTATCAACATCCCCCGCCGCGTCATCCTCCACCGCATTAACTTCAAGAATGCAGTCAATGCCCTCAAG TTCAGCCCTGATGGTAAGTTTATTGCTGTTGCGGCTGGAAAGTTGGTTCAAATCTGGCGGTCTCCGGGGTTCAAGAAGGAATTTTTCGCTTTCGAGTTAG TTAGGACCATAGCAGATTGCGAGGATACAGTTACCGCGATTGATTGGAGCTTGGACTGTAAGTATTTGCTTGTTGGCTCGAAGGATTTAGTGGCACGCCT CTTTTGCGTTGAGAAATTGAAAGATGGGATTTTGAATAAGCCCTTTTTGTTTTTAGGCCATAGAGATAATGTCGTTGGTTGTTTCTTTGGTTATGATAAG AAAAATACTGATCAGGTTAATAAAGTTTATACAATTACGCGTGATTGTTACATTTTTAGTTGGGGTTATAGTGGTAATAATGATGGTAATTTTGATGAAA ACGATGAGGGAAATTCAGAGCCTGCGTCTCCAGGGACGCCAAAGAGGGATGGGGAAGGGAATGTGAATGGTGAGAGCTTGGGTAATGTTAAAAAAAGGAA GGATTTTGATGGGAAAGATCTGGGAGAAGAGGGGTATTTGCATAAGAGGAAATGGGAGCTGTTAAGGAAAGATGGGTTTATGCAATCACCGGCGAAGTTA ACTGCATGTACTTACCATAGGGGGCTTGATATGGTGGTGGTGGGGTTTTCTAATGGTGTTTTTGGGTTATATCAAATGCCAGATTTTGTTTGCATGCACT TGTTGTCAATTTCCAGGGAGAAGATTACTGCTGCAGTGTTCAATGAGAGTGGGAATTGGTTGGTGTTTGGTTGTGCAAAGCTGGGGCAGTTGCTTGTGTG GGAATGGCGGTCAGAGAGTTATGTGTTGAAGCAACAAGGGCATTACTTTGATGTGAATTGCTTAACTTACTCGCCAGATTCACAATTGCTGGCTACTGGG GCGGATGATAATAAAGTAAAGGTGTGGACTGTTTCATCGGGCTTTTGCTTTGTAACATTCTCGGAGCACACTAATGCCGTGACTTCTCTTCATTTTATGG CTAACAACCATTGTCTTTTGAGTGCATCTCTTGATGGAACAGTACGTGCATGGGATTTGTACCGTTATAGAAATTTTAGGACATTTACCACCCCTTCTTC AAGGCAGTTTGTCTCTTTGGCAGCAGACCAAAGTGGGGAAGTAATTTGTGCTGGAACTCTAGATTCATTTGAGATATTTGTTTGGTCAATGAAGACAGGC CGTTTATTGGATATCCTTAGTGGTCATGGAGGTCCTGTTCATGGGCTGATATTTTCTCCCACAAATGCAGTCTTAACTTCATCATCATGGGACAAAACTG TTCGCTTGTGGGATGTTTTTGAAGGAAAGGGAGCTGTTGAAACGTTCCCTCACACACACGATGTTCTTACTGTGGTTTATCGTCCAGATGGAAGGCAATT GGCTTGCAGCACATTAGATGGGCAAATTCATTTCTGGGACCCAATTGATGGCTTGTTAATGTACACCATCGAGGGCCGCAGGGATATTGCTGGAGGGCGT CTCATGACTGATCGTAGATCAGCGGCAAACTCAACTGCAGGAAAGTGTTTCACAACCTTGTGCTATTCTGCTGATGGGAGTTATATATTAGCTGGCGGAA GTAGCAAGTACATCTGTATGTATGATGTCGCTGATCAGGTTCTGCTGCGTCGCTTCCAAATAACTCACAATCTCTCACTAGATGGGGTGCTGGATTTCTT GAACTCCAAGAAAATGACAGATGCAGGTCCACTTGATTTAATTGATGATGATGACTCTGATACTGAAGAAGGCGTTGATAAACAAACTCGAGGAAAATTG GGGTATGATTTACCAGGATCCATGCCCAATCGTGGAAGGCCTATTATTAGAACAAAATGCCTGAGAATTGCACCCACTGGGCGAAGCTTTGCAGCGGCAA CAACAGAGGGGGTTCTTGTTTATTCAATTGATGAATCCTTTATCTTTGATCCCACTGATCTAGATATAGATGTTACACCAGAGGCAGTTGAAGATGCATT AGATGAAGATCAACCAAACAGAGCTTTAATTCTCAGCCTTCGTCTGAATGAGGATTCACTAATAAAAAAGTGCATTTTTTCTGTCAGTCCATTGGATATA CCAGCTGTTGCCTCCTCAGTCCCATACAGATATCTGCAGAGATTAATTGAAGCATTTTCTGATCTTTTGGAAAGCTGTCCGCACTTGGAATTTATACTCC GTTGGTGTCAGGAGCTTTGCAAAGCTCATGGAAATTCAATTCAACAAAATTCCAGAAATCTTCTTCCCGCTTTAAAATCCTTGCAGAAAGCAATTACTGG AATACATCAGGATTTGGCAGATACTTGTTCGTCTAATGAATACATGCTCCGGTATTTATGCTCAAGCACCAACAAATGA
AA sequence Show only first row Show all	>Potri.001G173500.1 pacid=42791888 polypeptide=Potri.001G173500.1.p locus=Potri.001G173500 ID=Potri.001G173500.1.v4.1 annot-version=v4.1 MNYRFHNLLGAPYRGGNVVITQNTQLISPVGNRVSITDLLKSQTITLPLQSSSNIRRIAASPDGTFLLTVDENHRCHFINIPRRVILHRINFKNAVNALK FSPDGKFIAVAAGKLVQIWRSPGFKKEFFAFELVRTIADCEDTVTAIDWSLDCKYLLVGSKDLVARLFCVEKLKDGILNKPFLFLGHRDNVVGCFFGYDK KNTDQVNKVYTITRDCYIFSWGYSGNNDGNFDENDEGNSEPASPGTPKRDGEGNVNGESLGNVKKRKDFDGKDLGEEGYLHKRKWELLRKDGFMQSPAKL TACTYHRGLDMVVVGFSNGVFGLYQMPDFVCMHLLSISREKITAAVFNESGNWLVFGCAKLGQLLVWEWRSESYVLKQQGHYFDVNCLTYSPDSQLLATG ADDNKVKVWTVSSGFCFVTFSEHTNAVTSLHFMANNHCLLSASLDGTVRAWDLYRYRNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTG RLLDILSGHGGPVHGLIFSPTNAVLTSSSWDKTVRLWDVFEGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGRRDIAGGR LMTDRRSAANSTAGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKKMTDAGPLDLIDDDDSDTEEGVDKQTRGKL GYDLPGSMPNRGRPIIRTKCLRIAPTGRSFAAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVEDALDEDQPNRALILSLRLNEDSLIKKCIFSVSPLDI PAVASSVPYRYLQRLIEAFSDLLESCPHLEFILRWCQELCKAHGNSIQQNSRNLLPALKSLQKAITGIHQDLADTCSSNEYMLRYLCSSTNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	0	1
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	1.41	0.8937
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	2.82	0.9104
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	4.00	0.8793
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	4.24	0.8813
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Potri.001G368401 [exp]	5.65	0.8690
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	8.77	0.8646
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	10.95	0.8630
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	11.53	0.8522
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	12.40	0.8746
AT5G40520			unknown protein		Potri.017G018300 [exp]	13.11	0.8312

Compare expression of checked genes

Potri.001G173500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.