Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32440 207 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) AT5G20030 144 / 8e-40 Plant Tudor-like RNA-binding protein (.1) AT2G25590 144 / 5e-39 Plant Tudor-like protein (.1) AT3G06520 52 / 3e-07 agenet domain-containing protein (.1) AT1G09320 51 / 1e-06 agenet domain-containing protein (.1) AT1G03300 50 / 2e-06 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G26540 46 / 4e-05 Agenet domain-containing protein (.1) AT2G47230 45 / 0.0001 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250600 [exp] 253 / 2e-80 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 241 / 1e-75 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G216200 [exp] 160 / 2e-45 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 156 / 1e-43 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G011100 [exp] 58 / 4e-09 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 57 / 6e-09 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 53 / 2e-08 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.002G118600 [exp] 44 / 0.0002 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018749 [exp] 111 / 1e-27 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 108 / 2e-26 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 90 / 9e-20 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 83 / 2e-17 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10000353 [exp] 71 / 9e-13 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 69 / 2e-12 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010903 [exp] 62 / 3e-10 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10031429 [exp] 59 / 3e-09 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10018681 [exp] 46 / 6e-05 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10000040 [exp] 41 / 0.0002 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.001G173900.2 pacid=42790905 polypeptide=Potri.001G173900.2.p locus=Potri.001G173900 ID=Potri.001G173900.2.v4.1 annot-version=v4.1 ATGAGATTCAAGGCAGGTATGAAAGTGGAGGTATTAAGCAAAACGGAGGTTGCAACGGGTTCTTGGCTTTGTGCCGAGATAATCTCTGGGAATGGGCACA CGTACAGTGTGAAGTATGGCTGGTTTCCAATGAATAATGATGCAGAGGCAGTTGTGGAGAGGGTGCCTAGGAAGGCAATTAGGCCTTGCTCGCCACCGAT GGCGGGGGATGATCATTGGGTCCCTGGGGATCTTGTTGAAGTGTTCCACAATTCTGCTTGGAAGACAGCAATAGTAATGGAAGTTATGGGTGATAAAAGC TTTTTTGTTAGGTTACTTGGATTGTGTGGAGAATTCATTGTCCATAAATCTCATTTAAGAGTTCGACAGTGCTGGCAAGATGGCAAATGGATTGTCATGA GGAAGGGTTTGGAGAATTATTGTGTGCCTATGGGAAAAGGACTACCGGATACAGGGATACACCTGGCTGCTGACGATGATTGCTTTCCAGTGGAGAAAAT TTTTGAAGTGCGAAGGCGCCCTATGGTTTCCTCTAGAACATTGAAGAGAAGGTCAACATTTGGCAGTGATCTTGAAACATATCCAGTTACTGCTCAAAAG AAGAGACTGATTGAAAAAAATGGTAGTCATGAACAAATTTGTTCAGCTTATCCATCTCCTACTTTTGAAAAGGTAGACACGCTTATTTATCCAAATGAAA TATTGGGTGAGAATTATGTGCACTCTTCCTTTCATGTTGGAAAAGTTGAGCTCTCTAAAATGGATGTAGGTAGGAATAATGATGGTAGTCTTGTAGAATC CTCAATATCTGTTGACACTGATAGTTGTATGTCCTCCGTTGGTAGTTGTAGTGCTGTAGGCAGCTATGGTCACAACTTGCCTTGTCCAAACCTATGTGAT AAAAATTTAGAGGATTTGCATAGTGATGCTGAATCATCAAATGGATCAGAATATGAGATAAAAGATTCCCCATCCTATGATGAGAAATTTGGAGTTGAAG TGCATAGGTCAAAATTACATGCCTATTGTTCTACTGTTGAGGCATTGTATAGTGCAGGGCCTTTGAGTTGGGAAGATGAAGAAAATTTGACAAGCCTACG TGATGAGCTCCACATTTCAGATGATGAACACTTGATGGTGTTAAGAAATTTGACATCTGTTAATAGTAGGATTGTTAGTAGGTGA
AA sequence Show only first row Show all	>Potri.001G173900.2 pacid=42790905 polypeptide=Potri.001G173900.2.p locus=Potri.001G173900 ID=Potri.001G173900.2.v4.1 annot-version=v4.1 MRFKAGMKVEVLSKTEVATGSWLCAEIISGNGHTYSVKYGWFPMNNDAEAVVERVPRKAIRPCSPPMAGDDHWVPGDLVEVFHNSAWKTAIVMEVMGDKS FFVRLLGLCGEFIVHKSHLRVRQCWQDGKWIVMRKGLENYCVPMGKGLPDTGIHLAADDDCFPVEKIFEVRRRPMVSSRTLKRRSTFGSDLETYPVTAQK KRLIEKNGSHEQICSAYPSPTFEKVDTLIYPNEILGENYVHSSFHVGKVELSKMDVGRNNDGSLVESSISVDTDSCMSSVGSCSAVGSYGHNLPCPNLCD KNLEDLHSDAESSNGSEYEIKDSPSYDEKFGVEVHRSKLHAYCSTVEALYSAGPLSWEDEENLTSLRDELHISDDEHLMVLRNLTSVNSRIVSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	0	1
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	2.00	0.8451
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079450 [exp]	4.00	0.8284
AT1G65440		GTB1	global transcription factor gr...		Potri.001G034300 [exp]	4.12	0.7699
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	5.47	0.8309
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	5.47	0.8175
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	7.34	0.8061
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	9.48	0.8047
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	9.89	0.8097
AT2G32970			unknown protein		Potri.002G224900 [exp]	10.58	0.7727
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	11.95	0.7938

Compare expression of checked genes

Potri.001G173900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.