Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25460 506 / 1e-180 Protein of unknown function, DUF642 (.1) AT5G11420 504 / 8e-180 Protein of unknown function, DUF642 (.1) AT1G80240 489 / 6e-174 Protein of unknown function, DUF642 (.1) AT4G32460 485 / 2e-172 Protein of unknown function, DUF642 (.1.2) AT3G08030 374 / 1e-128 Protein of unknown function, DUF642 (.1.2) AT2G41810 363 / 2e-124 Protein of unknown function, DUF642 (.1) AT2G41800 361 / 3e-123 Protein of unknown function, DUF642 (.1) AT2G34510 330 / 1e-110 Protein of unknown function, DUF642 (.1) AT1G29980 323 / 8e-108 Protein of unknown function, DUF642 (.1.2) AT5G14150 143 / 5e-39 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059800 [exp] 724 / 0 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 520 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 509 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.009G058800 [exp] 392 / 1e-135 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 389 / 1e-134 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050400 [exp] 375 / 4e-129 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 366 / 2e-125 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 366 / 3e-125 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 323 / 2e-108 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 515 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 511 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 504 / 8e-180 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 491 / 2e-174 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 482 / 3e-170 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 386 / 4e-133 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 380 / 5e-131 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 358 / 4e-122 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 357 / 9e-122 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 351 / 3e-119 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.001G174400.1 pacid=42789825 polypeptide=Potri.001G174400.1.p locus=Potri.001G174400 ID=Potri.001G174400.1.v4.1 annot-version=v4.1 ATGCCTAACATCTCCTTCCTCCCTCTCTCTCCCTGTAAATTAAACGCAATGTACAGAGCCACCGTGCTGTTAGTGTCACTCTGCATCACCTGGCAAGTTG CGTTGTCAGTCACCGATGGTTTATTGCCCAATGGAGACTTCGAGTATGGGCCAAAGCCATCGGAAATGAAAGGAACGGTAGTGACAGCCAAGAATGCAAT TCCTAACTGGGAAATTTCCGGCTTCATCGAGTACATTAAATCAGGGCATAAACAAGGTGACATGTTGCTGGTAGTGCCTGTTGGAGCCTACGCAGTCAGA TTAGGGAACGAAGCATCAATTAAGCAAAAAGTTAAGGTCACACAAGGCGAGTTCTACTCTCTAACCTTCAATGTGGCTCGCACTTGTGCCCAAGAGGAGA AACTAAACTTGTCTGTTTCACCTAATTCGGAGCCAAGAGATTGGGGAATCTTGCCAATGCAAACAATGTATAGTAGCAATGGATGGGATGCCTATGCATG GGCTTTCCATGCTGACGGGCCTGAGGTTGAGATCTCCATCCACAACCCTGGTGTGGAGGAGGATGCCGCCTGCGGCCCACTTGTTGATTCCGTCGCGTTA AAGCTTTTGTCCAATCCAAAGCGTGCCAGAGACAACTTGTTAAAGAATGGGAATTTTGAGGAGGGTCCTTACATGTTTCCCAACACAGACTGGGGTGTCC TAATCCCTCCCCACATTGAAGATGATCAATGTCCTCTACCTGGATGGATAGTTGACTCTCTCAAGGCAGTAAAGTACATAGATAGAGAGCACTTTACAGT CCCAGAGGGAAAAAGAGCTGTTGAGCTTGTAGCAGGAAAAGAGAGTGCTATCTCGCAAACTGTGAAGACCATAATCAATAAGATCTATGTCCTCACATTC TATGTTGGTGACACCAGCAACTCATGTGTGGGATCAATGGTTGTAGAGGTTTATGCTGGCAAGGACAGAACTCAAGTTCCTTATGAATCTAATGGCAAAG GAGGGTTCAAGCGTGCCAAGTTCGTGTTCAAGGCCGTGTCAAATCACACAAGAATTACATTTCTTAGCTCATTTTACACCATGAAAAGTGACAACTCTGG TTCTCTATGCGGCCCAGTATTAGATGATGTGAAGCTGGTTAGTGTTCGAAATCCAAGGCGTCATCTGTGA
AA sequence Show only first row Show all	>Potri.001G174400.1 pacid=42789825 polypeptide=Potri.001G174400.1.p locus=Potri.001G174400 ID=Potri.001G174400.1.v4.1 annot-version=v4.1 MPNISFLPLSPCKLNAMYRATVLLVSLCITWQVALSVTDGLLPNGDFEYGPKPSEMKGTVVTAKNAIPNWEISGFIEYIKSGHKQGDMLLVVPVGAYAVR LGNEASIKQKVKVTQGEFYSLTFNVARTCAQEEKLNLSVSPNSEPRDWGILPMQTMYSSNGWDAYAWAFHADGPEVEISIHNPGVEEDAACGPLVDSVAL KLLSNPKRARDNLLKNGNFEEGPYMFPNTDWGVLIPPHIEDDQCPLPGWIVDSLKAVKYIDREHFTVPEGKRAVELVAGKESAISQTVKTIINKIYVLTF YVGDTSNSCVGSMVVEVYAGKDRTQVPYESNGKGGFKRAKFVFKAVSNHTRITFLSSFYTMKSDNSGSLCGPVLDDVKLVSVRNPRRHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25460			Protein of unknown function, D...		Potri.001G174400 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	5.19	0.9146
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	8.83	0.9097
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.015G063300 [exp]	9.48	0.9087
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G312700 [exp]	10.90	0.9044
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.005G223300 [exp]	12.00	0.9051
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G078200 [exp]	12.32	0.8881
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026032 [exp]	12.84	0.9048
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	14.38	0.8971	RIP1.3
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	16.24	0.9045
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	22.58	0.8965

Compare expression of checked genes

Potri.001G174400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.