Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52760 553 / 0 LysoPL2 lysophospholipase 2 (.1) AT1G11090 254 / 7e-83 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 202 / 6e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 201 / 6e-62 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 190 / 4e-58 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 189 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 187 / 7e-57 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 180 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19290 180 / 3e-54 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 177 / 6e-53 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059200 [exp] 632 / 0 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.011G046500 [exp] 249 / 2e-81 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 201 / 3e-62 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 199 / 2e-61 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 191 / 4e-58 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 189 / 1e-57 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 181 / 9e-55 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 183 / 1e-54 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G466700 [exp] 181 / 3e-54 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035909 [exp] 598 / 0 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10025754 [exp] 596 / 0 AT1G52760 564 / 0.0 lysophospholipase 2 (.1) Lus10011212 [exp] 237 / 2e-76 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 198 / 6e-62 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 196 / 6e-60 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 194 / 1e-59 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 186 / 6e-54 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 176 / 2e-52 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036530 [exp] 175 / 3e-52 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 173 / 8e-51 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G175000.1 pacid=42792677 polypeptide=Potri.001G175000.1.p locus=Potri.001G175000 ID=Potri.001G175000.1.v4.1 annot-version=v4.1 ATGTCATCCGAAACGCAGCAACCCGAAACGCCTCCCAACTTCTGGGGCGACATGCCGGAGGAGGAGTACTATGCGTCACAAGGAGTGACCACTACCCAAT CATACTTCGAGACGCCAAATGGGAAGCTCTTCACGCAAGGTTTTCTCCCGTTGGATAAAAAAGTCAAAGCCACGGTATATATGACCCACGGCTATGGATC TGATACTGGCTGGTTGTTCCAGAAGATTTGCATCAGCTTTGCTAACTGGGGTTATGCTGTTTTTGCCGCTGATCTTCTTGGACATGGCAGATCAGACGGT ATACGTTGCTACATGGGTGACATGGACAAGATTGCTGCCACTTCCCTGTCATTCTTCAAGCACGAGCGCTTCAGCGAACCATACAAGGGCTTACCAGCCT TCTTATTTGGTGAATCAATGGGTGGACTCACAACAATGCTAATGTACTTCCAATCAGAACCTAACATGTGGACGGGCTTGATTTTCTCGGCGCCACTTTT TGTCATACCAGAAGCGATGAAACCAAGCAAGGTACACCTATTCATGTATGGCCTGCTCTTTGGATTGGCTGATACGTGGGCAGCCATGCCAGACAACAAA ATGGTAGGCAAAGCGATCAAGGACCCAGAGAAGCTCAAGATCATAGCATCCAACCCTAGGAGATACACAGGCAAGCCTAGGGTGGGAACCATGAGGGAAA TTGCTAGGATGTGCCAATACATACAGGACAATTTCTCCAAGGTTACAGCGCCGTTCTTGACAGTCCACGGCACGGCTGATGGGGTGACATGCCCTACATC ATCACAGTTGTTGTTTGAGAAAGCCTCTAGTGAGGACAAGAGCTTGAAGATGTACGAGGGCATGTACCATTCTTTGATACAAGGTGAGCCCGATGAGAAT GCTAATCTTGTTTTGAAGGATATGAGAGGGTGGATTGACGAGAGGGTTGAGAGGTATGGGTCCAAAAAAGGCGATGACTGA
AA sequence Show only first row Show all	>Potri.001G175000.1 pacid=42792677 polypeptide=Potri.001G175000.1.p locus=Potri.001G175000 ID=Potri.001G175000.1.v4.1 annot-version=v4.1 MSSETQQPETPPNFWGDMPEEEYYASQGVTTTQSYFETPNGKLFTQGFLPLDKKVKATVYMTHGYGSDTGWLFQKICISFANWGYAVFAADLLGHGRSDG IRCYMGDMDKIAATSLSFFKHERFSEPYKGLPAFLFGESMGGLTTMLMYFQSEPNMWTGLIFSAPLFVIPEAMKPSKVHLFMYGLLFGLADTWAAMPDNK MVGKAIKDPEKLKIIASNPRRYTGKPRVGTMREIARMCQYIQDNFSKVTAPFLTVHGTADGVTCPTSSQLLFEKASSEDKSLKMYEGMYHSLIQGEPDEN ANLVLKDMRGWIDERVERYGSKKGDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.001G175000 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	3.31	0.9364
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	4.00	0.9316
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	5.65	0.9236
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	6.24	0.9269	TUB17,TUB6.1
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	6.32	0.9125
AT1G22060			unknown protein		Potri.006G120400 [exp]	9.21	0.9199
AT4G37235			Uncharacterised protein family...		Potri.007G033600 [exp]	10.24	0.9027
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	10.39	0.9057
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	10.58	0.8945
AT3G01810			unknown protein		Potri.001G333200 [exp]	10.90	0.9161

Compare expression of checked genes

Potri.001G175000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.