Plant FIBer expression Database

Potri.001G175500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15550 706 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G058600
[exp]
1178 / 0 AT3G15550 687 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035906
[exp]
712 / 0 AT3G15550 585 / 0.0 unknown protein
Lus10025757
[exp]
687 / 0 AT3G15550 587 / 0.0 unknown protein
Lus10025758
[exp]
499 / 2e-172 AT3G15550 453 / 9e-155 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G175500.1 pacid=42790634 polypeptide=Potri.001G175500.1.p locus=Potri.001G175500 ID=Potri.001G175500.1.v4.1 annot-version=v4.1
ATGGCAGCCGATTATGCATTCAAGGAAGAAGATATGGAGATCGATGAGGGATTTGGGTTCCCAAGAGCCTATGCAAAGCTATGTAGAGATCATGGTGTTG
TTGGGACTTATACCCATGGTCCTCCTTTCGCTTTCACTCCATATGCAATGCAGCAACATGAGATTTTGAGAACAAGGGAATTAGATCAGATGTTTCCAGT
TATTGAACCAAAAGCAAAACAAACTGCCAAGCCCAAGATTTTTATCAGTCTCTTGTGGAGGCAGCTTAATCACCTAGGGAATGCTGGATTTGATCCTGCA
GTAATTCGAGTGGATCCATACGGCAATGTTCTATATTTTCATGCTGATAAAGCCTCTCCTCTTGCTTGGGACATTGATCATTGGTTCCCTTGCCCAAGGG
GAGGATTGACAGTTCCAAGAAATCTGAGGATACTACAACGGCAAGTGTGCAAGAGGAAGCATAACAAGTTGGAGTTTCTCGTTCCATGGTGGGATCTTCA
GCTGGGAATCTCTGTGAACCAGTTCTTATCAATCTTTGCTTCTTCCAGCTCAGATTTCAGGCACAGGGCATTTTCATTTTTGTTCTCAGGAGGAGAAAGT
GAGGAACTAAATGCTTCCCAGACAGTAGAGTCACATTCTTTTCCACAACATTTCATTGAATCGATCGAGAAACTGGGCCTTGCTCCAGCTGCTGTTGTTG
TATCTCGAAGAGAATCATATGATTCTTCACTGGCTTTGAAATCATTGGATTACAACAGGCAGATAAGGCCCCATTCTCCTGCAATAGCTTCAAGAAAAAT
GAAGCCAGGTGTTCTGAAAGAAAATGAGAACTCAGACTTTGTCACAAATCCATATCAAGCAATTGTCATGGCCAGAGATTCTCTTAAGCAAAAAGAAGCA
GCTCACAAGATGCAGGCTGAAATACTGAGTTTGGACGACGAAGTTAATGAAATAAAGAGAAATGATGATGAGGAAAAGCTTAGTATTCAGGACTTGGAAT
TGACACTGATAAAGCGTAGGAGAAGGGCAGAAAAGTGCAGGCGGCTAGCAGAGGCACAATCTTCATATAGAACTATGCTAGAGAGGATGATTCGTGATGC
TATGCACCAGAGTGTTGTTTATAAGGAACAAGTGAGACTGAACCAGGCTGCAACACATGCACTCATGGCAAGGCTTGAAGCACAGAAGGCAATCTGTGAT
GCTTCCGAGAAAGAACTCCACAAGAAATACAAACAAAGAGACGAGCTTGAGAAACAAATTAGGCCTGAATGGGAGCAGGGAAGGAAGAGATCAAGAATGG
ATGATACCTTACCTGAAGATGCAGACAGCAAAACTGTACTTTACTTACCAGGAATAAGGACAAGGACACCTTCACACAAGGAGCTCAGAGTTTTTCTAGA
GGAGCAGAAAGCAACTGAAGCTGGCTTGCCTGCAAACGAAGATGCAAAACAAGACGAAATTGAAGAGGAACTCAAACAACCTGAAATGACTATCATGAGA
GAAGAGCACGATAAATCAATCATTGCATTGGAAAATGAAATTCCAATTGAGTATAGGCTTCAGGCACTGAAAATAGGAGAAGGAAAGAGAGAAAAAATTC
AATTCCCATTTATCCAAGACCAAGAAATAGAGGAGGATGAAGAGAGCAGAAAGCAACGCGGAAAGGGAAATGTAGAGAGGTGGCTGCAATTTCTGTTAGA
GAATTCTGGAGAAGAGATTGAACGACAAAACTCAAACGGCTGTGAAACAAACACATCTGGTGATATTATTACGAAGCTGAACCAAAAGTTCCCACAGGAG
GAGGCCAGGAGTTCAACACGTGTTCAAGGAAACGATAAAGGAAAAAGGTTAGAAGAGATTATTGAGATAGAACCACTGAAAGAAGAAGAAAATGGCAGTG
TTGGTGGTGAAGCAATTGCAAGTAGCAACAGTTTTGAAGGGAAGGAAAGAATAGAGAGCCAAAAAGAAAGAGTGCTTACAAGGTCTGAGAGTGCCAGGAC
ATTGCGGCGTATCCCATCCTCTACATCTTTGATCTTGGGTATGAGAAAGGGAGTGGAATGCATCAGGAAAAAGCCCATGGTAACTGGTGATGATGACGAG
ATGGTGATCGGGCTGCAGGGAACAGCTTCATCAAGTCATCCATCAAGAGTATCAAGAAAGCAGTGA
AA sequence
>Potri.001G175500.1 pacid=42790634 polypeptide=Potri.001G175500.1.p locus=Potri.001G175500 ID=Potri.001G175500.1.v4.1 annot-version=v4.1
MAADYAFKEEDMEIDEGFGFPRAYAKLCRDHGVVGTYTHGPPFAFTPYAMQQHEILRTRELDQMFPVIEPKAKQTAKPKIFISLLWRQLNHLGNAGFDPA
VIRVDPYGNVLYFHADKASPLAWDIDHWFPCPRGGLTVPRNLRILQRQVCKRKHNKLEFLVPWWDLQLGISVNQFLSIFASSSSDFRHRAFSFLFSGGES
EELNASQTVESHSFPQHFIESIEKLGLAPAAVVVSRRESYDSSLALKSLDYNRQIRPHSPAIASRKMKPGVLKENENSDFVTNPYQAIVMARDSLKQKEA
AHKMQAEILSLDDEVNEIKRNDDEEKLSIQDLELTLIKRRRRAEKCRRLAEAQSSYRTMLERMIRDAMHQSVVYKEQVRLNQAATHALMARLEAQKAICD
ASEKELHKKYKQRDELEKQIRPEWEQGRKRSRMDDTLPEDADSKTVLYLPGIRTRTPSHKELRVFLEEQKATEAGLPANEDAKQDEIEEELKQPEMTIMR
EEHDKSIIALENEIPIEYRLQALKIGEGKREKIQFPFIQDQEIEEDEESRKQRGKGNVERWLQFLLENSGEEIERQNSNGCETNTSGDIITKLNQKFPQE
EARSSTRVQGNDKGKRLEEIIEIEPLKEEENGSVGGEAIASSNSFEGKERIESQKERVLTRSESARTLRRIPSSTSLILGMRKGVECIRKKPMVTGDDDE
MVIGLQGTASSSHPSRVSRKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15550 unknown protein Potri.001G175500
[exp]
0 1
AT5G04320 Shugoshin C terminus (.1.2) Potri.009G006100
[exp]
2.44 0.9762
AT4G14330 P-loop containing nucleoside t... Potri.010G069400
[exp]
3.87 0.9737
AT2G20590 Reticulon family protein (.1.2... Potri.007G137700
[exp]
4.00 0.9742
AT4G14330 P-loop containing nucleoside t... Potri.008G169000
[exp]
4.89 0.9730
AT1G26760 SDG35, ATXR1 SET domain protein 35 (.1) Potri.008G089500
[exp]
5.91 0.9674 SDG942
AT3G10310 P-loop nucleoside triphosphate... Potri.006G048600
[exp]
6.48 0.9680
AT3G15550 unknown protein Potri.003G058600
[exp]
8.06 0.9637
AT3G17640 Leucine-rich repeat (LRR) fami... Potri.011G023500
[exp]
9.48 0.9181
AT1G72250 Di-glucose binding protein wit... Potri.001G436200
[exp]
9.94 0.9648
AT5G03870 Glutaredoxin family protein (.... Potri.006G212700
[exp]
9.94 0.9671

Potri.001G175500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.