Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52780 1106 / 0 Protein of unknown function (DUF2921) (.1) AT4G21700 156 / 1e-38 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187000 [exp] 521 / 2e-167 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1) Potri.011G052500 [exp] 166 / 7e-42 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.003G087400 [exp] 159 / 1e-39 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005493 [exp] 166 / 2e-41 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10006025 [exp] 154 / 5e-38 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10030937 [exp] 134 / 2e-31 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1) Lus10033064 [exp] 86 / 7e-18 AT1G52780 84 / 1e-17 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [poplar] [flax] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Potri.001G175600.1 pacid=42790256 polypeptide=Potri.001G175600.1.p locus=Potri.001G175600 ID=Potri.001G175600.1.v4.1 annot-version=v4.1 ATGAAGAATACTGCATATGTTGTTGTTCTTGTTTGGAGTTTCTGTTGGTTGCCGCTGATATTTGGTTTCACAAATTCATACACCACAGCTTCAACTGTTG TGTTTGAGTCTGCAACTAGTGAATCTACTGTGAACTATAATTATGATAGAATTGATGAAGTGAAGAAACATTGTGCTCCTTTTCTAGCTTCTGCTTCTGA TTTGAAACATGAAGTTGATAGAGTGTATAATATTGAAGATCTTTATTTCGTTAACGGGGATTGGAGGCAGGAGGTGGGTCAATCCCCACTACTGCCATAT ATTGATCCAGGCATTCAAAAAAGTAATTTTTCTGATTTCAAGACCCCACTGAACTTAGCTTCTTTCTGGATCATGGATGTTGATCGTTCCCATCGATCGA AAAAATCAGTTAGTGTGAATGGGTTCTTGGTTATGGGCACTACCCTAGATTCATTCAGGGACAAACCATATGATGGTAGCCCTCACTTTCAGATATGGTC TGGTCACACACAGCTTTCCATTTCATTTCAAGGGATATATACAGAGTCTAAGAACAATGGGGGTGAAAGAGTGATGTGTTTGTTGGGGAGCACCATGTTG CCTTCCAGAGAGTCCGACTCGAGCAATCCATGGGAATGGGCAAAAGCTAATTTTAACCAGCCACCTCTTCTGCAAGATGATCAGATTCTGCTTGTTCTTC GTTATCCAATGAGTTTTACATTGACAAGTAGAGTGATCCAGGGGGAGATGAAGAGTTTAAACTCCAAGTCAAATCTTAAGTACTTTGATGAAGTTCGCAT TTTGTCTCAACTGGGGCAGTCAGTGAAATACGAGTTTGGCTCTGAAAGCTTGGTTTCCAAATCGTGTGCTCCATACCCATATAATGATAGCTTTGTGAAT GGTGGCATTGATATCTATAAAGGAACTGGATTTTGTGAAATTCTGGGGATGATTACTGGAGAAGGAGCTGGGCCTTTCACCATTGTGCCAAATTGGAGAT GCAGTGGTACAGATGCTTATTGCAGTAAATTGGGTCCATTTGTTTCAGACAAGGAGATCAAGGCCACAGATGGGAGCTTTAAAGGCGTCAAGCTTGCTAT GCAGAATGTTATATGTGAGCAAAAAGCTGCTCCAGGAAATGCAAGTTCTGCAAGAGTTGCTGCTGTCTTTCGAGCCATTCCTCCACTAGAGAATCAGTAT GCTGTGGCAATGAGATCCGGGCTGAGCAACATGACTGTTGTGGCTGAGGGAATCTGGAAATCTTCGACCGGGCAGCTTTGCATGGTCGGTTGCCTTGGAT TAGTTGACTCAGATGGAAGTACCTGTGATTCACGAATCTGTTTGTACATTCCTTTGTCATTTTCCATAAAGCAACGGAGCATAATTTTTGGGAGTTTCTC CAGCACCAGTAGAATTAATGACTCATACTTCCCTTTATCATTCGAAAAACTAGTGCAGCCGACAGAGTTGTGGAATTATTTTAGGAATTCCCATCCATTT TACAGTTACTCAAAAATAGAACAAGCTGGTGTTATCCTGGAAAAAAATGAGCCCTTCAGTTTTCAGACTGTTGTAAAAAAATCATTGCTGCATTTCCCGA AAGTAGAGGACACAGAGACATTAAGAACTGGTCTTTCTCTTCTTGCAGAGGATCTTACCCTCCATAGGTCTGCCTTTCCTGATCCACTCCCTCGTTCACA GCCAAAAAAACGAACTCATTTTCAGATTGAAATTCTCTCTCTTGGCCCCATGTTTGGGCGATTCTGGAATGTTTCGTTCGGAGATGAGGAAACTCTTTAC GATAATGAATCTCAGTATACCCAAAAACAACTTCTTATGAATGTATCAGCTCAGATTACACTTGATGGAGAAGCTTATAGCAATTTTTCTGTGCTTTTTC TGGAAGGCCTGTATGATCCTCTTGTTGGGAAGATGTATCTAGCTGGTTGCAGGGATGTCCGGGCCTCATGGAATATCTTATTTGAAAGCAATGATCTTGA GGCGGGTTTGGATTGTTTAATTGAAGCAATGGTGTCTTATCCACCTACTACAGCTCGGTGGCTGGTCAACCCAACAGCTAGGATTTCCATTTCAAGCCAA CGGGGTGAAGATGATCCCCTCTATTTTAGCACGGTTAAGCTCCAAACTCGTCCTATTATGTATAGGAGGCAGAGGGAAGACATTCTATCTCGCAGGGGGG TTGAGGGGATCCTCCGGATTTTGACTCTTTCATTTGCAATTGCTTGTATTTCAAGCCAACTATTCTACATCAATCATGAAGTGGATTCTGTTCCGTTCAT GTCTCTGGTTATGCTTGGTGTCCAAGCTCTTGGATATAGCCTTCCGCTAATCACTGGTGCAGAAGCTCTCTTTAAGAGGAAGTCATCGGAATCTTATGAA AGTTCATCTTATTATCTTGAGAAGAATCAGTGGCTCAATGTGATTGATTACGTGGTGAAACTTCTTGTTATGGTTGCATTTCTTGTAACTCTAAGGCTTT GTCAGAAGGTGTGGAAATCTCGTATCAGATTACTTTCAAGAAGCCCCCGTGAACCACATCGCGTCCCAAGTGAGAAATGGGTATTTCTGACTACCTCGAC CATACATGTGATTGGGTATGTAATTGTGCTCATCATTCATTCTGCAAAAACCAGCCAGATATCTGTTCAAATGGTGGAATACCTTGATTCATCAGGCCGT TCCCACACGATCCGGGAATGGGAAACCAAACTAGAGGAGTATGTGGGTCTTGCTCAGGATTTCTTCTTGCTTCCACAAGTAATAGGTAATATTATTTGGC AAATCAATTGCAAGCCACTGAGGAAACTTTACTTTATTGGGATCACAGTTGTCAGACTTCTCCCTCATTTCTATGATTACATAGAGTCGCCTGTTCGCAA TCCTTACTTTGCCGAGAAATATGAGTTTGTGAACCCGAATATGGATTTCTACTCCAAGTTTGGGGATGTTGCCATACCTGCCACTGCGATTTTTCTTGCA GTTGCAGTCTATATTCAGCAGAAGTGGAATTATGAGAAGCTAAGCCAAACTCTCACTATTGGGCGGCGAAGGCTACTTCCTTTGGGGTCCAGAGCCTATG AGAGGTTGCCTTCAAAGTCAGTTGAGGCTGAACTTGCTTCTGGTGTCAATGGAAATACCAAATTGGAGACAGAACATGAAGAAGAAGAATAA
AA sequence Show only first row Show all	>Potri.001G175600.1 pacid=42790256 polypeptide=Potri.001G175600.1.p locus=Potri.001G175600 ID=Potri.001G175600.1.v4.1 annot-version=v4.1 MKNTAYVVVLVWSFCWLPLIFGFTNSYTTASTVVFESATSESTVNYNYDRIDEVKKHCAPFLASASDLKHEVDRVYNIEDLYFVNGDWRQEVGQSPLLPY IDPGIQKSNFSDFKTPLNLASFWIMDVDRSHRSKKSVSVNGFLVMGTTLDSFRDKPYDGSPHFQIWSGHTQLSISFQGIYTESKNNGGERVMCLLGSTML PSRESDSSNPWEWAKANFNQPPLLQDDQILLVLRYPMSFTLTSRVIQGEMKSLNSKSNLKYFDEVRILSQLGQSVKYEFGSESLVSKSCAPYPYNDSFVN GGIDIYKGTGFCEILGMITGEGAGPFTIVPNWRCSGTDAYCSKLGPFVSDKEIKATDGSFKGVKLAMQNVICEQKAAPGNASSARVAAVFRAIPPLENQY AVAMRSGLSNMTVVAEGIWKSSTGQLCMVGCLGLVDSDGSTCDSRICLYIPLSFSIKQRSIIFGSFSSTSRINDSYFPLSFEKLVQPTELWNYFRNSHPF YSYSKIEQAGVILEKNEPFSFQTVVKKSLLHFPKVEDTETLRTGLSLLAEDLTLHRSAFPDPLPRSQPKKRTHFQIEILSLGPMFGRFWNVSFGDEETLY DNESQYTQKQLLMNVSAQITLDGEAYSNFSVLFLEGLYDPLVGKMYLAGCRDVRASWNILFESNDLEAGLDCLIEAMVSYPPTTARWLVNPTARISISSQ RGEDDPLYFSTVKLQTRPIMYRRQREDILSRRGVEGILRILTLSFAIACISSQLFYINHEVDSVPFMSLVMLGVQALGYSLPLITGAEALFKRKSSESYE SSSYYLEKNQWLNVIDYVVKLLVMVAFLVTLRLCQKVWKSRIRLLSRSPREPHRVPSEKWVFLTTSTIHVIGYVIVLIIHSAKTSQISVQMVEYLDSSGR SHTIREWETKLEEYVGLAQDFFLLPQVIGNIIWQINCKPLRKLYFIGITVVRLLPHFYDYIESPVRNPYFAEKYEFVNPNMDFYSKFGDVAIPATAIFLA VAVYIQQKWNYEKLSQTLTIGRRRLLPLGSRAYERLPSKSVEAELASGVNGNTKLETEHEEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	2.00	0.9297
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	4.24	0.9329
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	4.47	0.9208
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	5.19	0.9209
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	5.47	0.9258
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	5.83	0.9333
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	6.78	0.9361	Pt-ADL5.1
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	6.92	0.9167
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.017G075600 [exp]	8.83	0.9040
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	12.00	0.9005

Compare expression of checked genes

Potri.001G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.