Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrPDR12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 2058 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 1724 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1719 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT2G26910 1644 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G16340 1632 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 1628 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1626 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G30842 1562 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 1484 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1394 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048800 [exp] 2174 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 2166 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 2150 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2135 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 2127 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 2118 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 2107 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 2100 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 1868 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041668 [exp] 2085 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 2069 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 2063 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1989 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1954 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1924 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1784 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1659 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10008984 [exp] 1631 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10014150 [exp] 1630 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G175700.1 pacid=42791332 polypeptide=Potri.001G175700.1.p locus=Potri.001G175700 ID=Potri.001G175700.1.v4.1 annot-version=v4.1 ATGGAAAGTGGTTATCTTTACAGAGCCGGTAGCAGTGTAAGAAGAGGAAACTCTTCAGGAACATTTAGTAACAATGCAGCTGCAGATCATCAAGTTTTTT CACTTTCTTCTCACGGACAAGACGACGATGAAGAGGCTTTAAAATGGGCGGCATTAGAGAAACTACCAACCTATGATCGTTTGAGGAAAGGTATATTAAC CACGTCCACAGGTGCTGCTAGTGAAGTGGAGGTGCAGAATCTTGGGTTCCAAGAAAGGAAGAATTTGGTGGAGAGGTTGGTCAATGTAGCAGAAGAGGAC AATGAGAAGTTCTTGTTAAAGCTCAAGAACCGTATTGATAGAGTTGGAATTCATGTTCCCACAATTGAAGTTCGATTCGAGCATCTAAATGTTGAAGCAG AAGCCTATGTAGGAAGTAGAGCTTTGCCTACATTCTTTAACTACTCTGTTAATATGCTGGAGGGTGTCTTGAACTATCTCCATATTCTTTCTAGTAGAAA GAAACATATGTGGATCCTTAAGGATGTTAGCGGTATCATCAAGCCATCGAGAATGACATTGCTTTTGGGCCCTCCAAGTTCCGGAAAGACAACGCTTTTG TTAGCTTTGGCTGGAAAGCTTGATCATGCTCTAAAGTTTTCAGGGAGGGTGACTTATAATGGTCATGAAATGGATGAGTTTGTACCGCAAAGAACTGCTG CCTATATCAGTCAACACGATCTGCATATAGGAGAAATGACTGTAAGGGAAACCTTGGCCTTTTCTGCAAGATGCCAAGGGGTTGGAAGCCGTTATGATAT GTTAGCAGAATTATCGAGAAGGGAGAAAGAAGCGGGGATCAAACCTGATCCTGATATTGATGTCTTCATGAAGGCTGCAGCGACAGAAGGTCAGGAGGAC AGTGTGGTGATAGATTACATTCTGAAGGTTTTAGGACTGGAAGTCTGCGCGGATACATTGGTCGGGGATGAAATGCTGCGGGGTATTTCTGGAGGACAAA AGAAGCGTGTTACCACAGGTGAGATGCTGGTTGGACCAGCAAAGGCACTGTTTATGGATGAGATATCTACTGGATTGGATAGCTCAACAACGTACCAGAT TGTGAACTCCATCAAGCAATATGTCCAAATTCTTGAGGGAACTGCTCTCATCTCTCTCCTCCAGCCAGCGCCAGAGACTTATGATCTCTTTGATGACATT ATTCTTCTCTCAGATGGCGAGATAGTGTATCAGGGACCTCGTGAGCATGTCCTCAGGTTTTTTGAATATATGGGCTTCAAGTGTCCTGCAAGGAAAGGTG TGGCAGACTTCTTGCAAGAAGTGACATCAAGGAAAGATCAGATGCAGTATTGGGCACGACGAGATGTGCCATACAGATTTGTCACAGTCAAAGAATTTGC CGAGGCATTCTATTCGTTTCATGAAGGAAAGAGACTTGGAAATGAGCTTGCAGTTCCATTTGATAAGAGCAAGAACCACCCAGCTGCTTTGACTACCAAG AAATACGGAGTTAATAAGAGAGAGCTATGCAAAGCTTCTTTCTCAAGAGAATTCTTACTCATGAAAAGGAACTCATTCGTCTACGCCTTCAAGTTCATTC AACTGACAATAGTCGCAGTGATTGCGATGACACTCTTTCTACGGACTGAAATGCACCGAGACTCGGTAACCGATGGAGGAATTTATGTGGGCGCTATGTT CTTCATTGTGGTTGTGATCATGTTTAATGGTATGGCTGAGATTTCCATGACCCTTGCAAAGCTTCCTGTGTTCTACAAGCAAAGGGACCTTCTATTCTTT CCTGCTTGGATATATGCTCTTCCTACATGGATCCTTAAAATCCCTATCACTTTCATCGAAGTTGCTATTATGGTTTTCATTACGTATTTTGTCATTGGAT TTGATCCAAATGTAGGAAGGTTGTTTAAGCATTACCTCGTGCTCTTATTAACAAATCAGATGGCTTCTGGATTATTCCGAACCATTGCTGCTGTTGGCAG GAACATGGTTGTTGCTAACACCTTCGGGTCATTTGTACTTCTCTTGCTGTTTGTTTTGGGTGGCTTTGTCTTGTCACGAGATGACATAAAGAAATGGTGG ATTTGGGGCTTCTGGACATCACCCATGATGTATGCGCAGAATGCAGTTGTCGTGAACGAGTTTCTTGGAAAGAGTTGGAACCATGTTCTTCCAAACTCAA CGGAGCCATTGGGAATTGAAGTTCTGAAGTCTCGTGGGTTCTTCACAGAAGCATATTGGTATTGGTTAGCAGTAGCAGCATTGTTTGGATTCACTCTACT ATACAACTTCTTGTACATTTTGGCTCTCGCTTTTCTCAACCCATTAGGAAAGCCACAACAGGCTGGTATATCAGAAGAACCTCAAAGCAACAACGTTGGT AGAATAGGAGAAGCCATTCATTTAATGAACCCTGGAATTAACTCTAGCCTCCACACAAGTGCAGAGAGCATAGATGAAATTGGAAGAAGCAAGTCATCAA GGTTCACATGTAACAAACAAAGGGGGGTCATTATTCCATTCGAACCACATTCTATAACGTTTGATAAAGTTATGTACTCAGTTGACATGCCACAGGAAAT GAAAAGTCATGGTGTTCATGAAGATAAATTGGTACTGTTGAAGGGTGTGAGTGGCGCATTTAGGCCAGGTGTTCTCACAGCTTTAATGGGCATCAGTGGT GCTGGTAAAACCACAATGATGGATGTTCTTGCTGGTAGGAAAACTGGTGGATATATTGAGGGGAACATCACAATTTCTGGGTATCCGAAGAAGCAAGAAA CATTTGCTAGAATATCTGGATACTGTGAGCAAAATGACATCCACTCACCACATATTACTGTCTATGAGTCCTTGCTCTACTCAGCTTGGCTTCGTCTTCC CACTGAAGTAGACATTGAAACTAGAAAAATGTTCGTTGAGGAGGTCATGGAGCTTGTAGAACTGAATCCATTGAGGCAAGCTTTAGTTGGATTGCCTGGT GTAGATGGTCTGTCAACTGAGCAACGGAAGCGACTAACCATTGCAGTTGAGCTAGTGGCAAACCCCTCAATTATTTTTATGGATGAACCAACTTCAGGGC TTGATGCAAGAGCAGCTGCTATTGTTATGAGAACAGTTAGGAACACAGTGGACACAGGAAGAACAGTTGTCTGCACCATCCATCAACCAAGCATTGACAT ATTTGAAGCTTTTGATGAGTTGTTTCTACTGAAGAGAGGAGGACAAGAGATATATGTGGGGCCATTGGGTCGACTTTCTTGCCATCTGATCAAGTATTTT GAGGGAATTGAAGGAGTCAACAAAATCAAAGATGGTTACAATCCGGCTACTTGGATGTTGGAAGTGACCAGTACAGCAGAAGAATTGGCTCTGGGGGTTG ATTTTGCTGAAATATATAGAAGTTCAGAATTGTTTAGGAGAAACAGAGCTCTCATAAAGGATTTGAGCACTCCTGCTCCTGGTTCGAAGGACCTCTATTT CTCTACTCAATATTCGCGATCATTTTTCACCCAGTGTTTGGCTTGCTTATGGAAACAGCACTGGTCGTACTGGCGCAACCCTCCATACACTGCTATCAGA TTTCTCTCTACAACAGTCATAGGCTTGATCTTTGGAACAATGTTTTGGGATATTGGCTCCAAAATAACAAAGCGACAAGATCTTTTTAATGCAATGGGTT CAATGTATACCGCTGTTCTCTTTCTTGGTGTCCAAAATGCCGCGTCTGTTCAGCCTGTGGTAGCAGTTGAGCGAACTGTCTTTTACAGAGAGAGAGCTGC TGGAATGTACTCTGCCTTGCCGTATGCCTTTGCACAGGTTCTCATTGAGCTTCCATATATTTTTGTCCAAGCTGCAGTTTATGGTGTTATAGTCTATTCA ATGATTGGATTCGGATGGACCATCTCAAAGTTCTTCTGGTATCTGTATTTCATGTACTTCACGCTACTGTATTTCACCTTCTATGGCATGATGGCCGTGG CCGTGTCACCAAATCACCAAATTGCGTCTGTAATTTCTGCTGCATTTTATGGAATCTGGAATGTATTTTCAGGATTCGTAATCCCACGATCTCGGATGCC TTTGTGGTGGAGATGGTACTCTTGGATATGTCCAGTCTTTTGGACCCTGTATGGACTGGTTGCCTCCCAGTTTGGGGATATGAAGGATAGACTTGAAACT GGTGAAACAGTGGAGCAATTCGTGACAATTTATTTGGATTTCAAACATGATTTTCTTGGAGTTGTTGCAGCTGTGATTCTTGGGTTTACAGTCCTTTTTG CAATAACTTTCGCCATTTCCATCAAGCTCTTCAATTTCCAAAGGCGATAG
AA sequence Show only first row Show all	>Potri.001G175700.1 pacid=42791332 polypeptide=Potri.001G175700.1.p locus=Potri.001G175700 ID=Potri.001G175700.1.v4.1 annot-version=v4.1 MESGYLYRAGSSVRRGNSSGTFSNNAAADHQVFSLSSHGQDDDEEALKWAALEKLPTYDRLRKGILTTSTGAASEVEVQNLGFQERKNLVERLVNVAEED NEKFLLKLKNRIDRVGIHVPTIEVRFEHLNVEAEAYVGSRALPTFFNYSVNMLEGVLNYLHILSSRKKHMWILKDVSGIIKPSRMTLLLGPPSSGKTTLL LALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQED SVVIDYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDI ILLSDGEIVYQGPREHVLRFFEYMGFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRLGNELAVPFDKSKNHPAALTTK KYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVAVIAMTLFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLFF PAWIYALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLFRTIAAVGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWW IWGFWTSPMMYAQNAVVVNEFLGKSWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFLNPLGKPQQAGISEEPQSNNVG RIGEAIHLMNPGINSSLHTSAESIDEIGRSKSSRFTCNKQRGVIIPFEPHSITFDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTALMGISG AGKTTMMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVYESLLYSAWLRLPTEVDIETRKMFVEEVMELVELNPLRQALVGLPG VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRLSCHLIKYF EGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDFAEIYRSSELFRRNRALIKDLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPPYTAIR FLSTTVIGLIFGTMFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVAVERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQAAVYGVIVYS MIGFGWTISKFFWYLYFMYFTLLYFTFYGMMAVAVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWYSWICPVFWTLYGLVASQFGDMKDRLET GETVEQFVTIYLDFKHDFLGVVAAVILGFTVLFAITFAISIKLFNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	0	1	PtrPDR12
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	1.00	0.9357	Pt-LTP1.2
AT4G21620			glycine-rich protein (.1.2)		Potri.011G045000 [exp]	1.41	0.8788
AT2G20830			transferases;folic acid bindin...		Potri.019G104700 [exp]	1.73	0.8716
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	9.48	0.8192
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	11.53	0.8152
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014351 [exp]	12.48	0.7723
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	14.31	0.8216
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018600 [exp]	14.49	0.7430
					Potri.010G146200 [exp]	15.16	0.7888
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.004G084233 [exp]	17.14	0.7682

Compare expression of checked genes

Potri.001G175700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.