Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA3ox1,Pt-LE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 452 / 1e-159 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 411 / 9e-144 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 369 / 6e-127 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT4G21690 325 / 1e-109 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT2G38240 209 / 2e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 189 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 188 / 1e-56 ATSRG1, SRG1 senescence-related gene 1 (.1) AT3G21420 187 / 6e-56 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 186 / 1e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 185 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057400 [exp] 677 / 0 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.018G033600 [exp] 370 / 8e-128 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 356 / 5e-122 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 196 / 1e-59 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G355200 [exp] 191 / 1e-57 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G188000 [exp] 189 / 1e-56 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 188 / 2e-56 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 187 / 6e-56 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 187 / 8e-56 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011476 [exp] 497 / 4e-177 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008100 [exp] 287 / 8e-95 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 271 / 1e-88 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 260 / 5e-84 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10023113 [exp] 201 / 9e-63 AT1G15550 171 / 1e-51 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10006518 [exp] 199 / 2e-60 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011985 [exp] 196 / 5e-59 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10030995 [exp] 189 / 8e-57 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10028068 [exp] 186 / 8e-56 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10022292 [exp] 186 / 1e-55 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G176600.1 pacid=42792324 polypeptide=Potri.001G176600.1.p locus=Potri.001G176600 ID=Potri.001G176600.1.v4.1 annot-version=v4.1 ATGCCTTCAAGATCGTTATTAGCAGACGCTTTTAGAGCCCACCCTGTCCATGTACACCAAAAGCACTTTGACTTTACCTCTCTTCAAGAAATACCTGACT CGCACAAATGGACTCAGATCGATGATGAAGAGCATCCTTTAGTTGACCCCTTAAACACTGAATCCGTGCCCGTTATCGATCTGTCAGACCCTAATGTCCT TCAAAATATAGGCCATGCATGCAAAACTTGGGGTGTGCTTCAAGTCACAAACCATGGCATCCCTACCAGCCTTCTTGAGAACATTGAGAGTGCTAGTAGG AGCCTTTTCTCTTTACCTATCCAACAAAAACTCAAAGCAGCTAGATCACCCGATGGGGTTTCAGGCTACGGTGTCGCTAGGATTTCTTCATTTTTCTCCA AGCTCATGTGGTCAGAGGGATTCACCATAGTTGGCTCTCCTCTTGAGCATTTTCGCCAACTTTGGTCTCAAGATTACACCAAATTCTGTGATATAATTGA AGAATATAAGAAAGAAATGCAAAAGCTAGCAAGGAGGTTGACATGGTTAATGCTGGGCTCATTAGGAATAGCAAAGAAAGATCTCAAATGGGCTGGCTCA ACAGGTGAATCAAAAAAGGGTAGTGCAGCCCTACAACTGAATTACTACCCGGCTTGCCCGGATCCAGATCAGGCAATGGGTCTTGCCGCCCACACAGACT CCACCCTCCTCACCATTCTTTACCAGAGCAACACCAGTGGATTGCAGGTGCTAAAAGAGGGAATTGGGTGGATCACTGTCCCACCAATCCCTGGTGGGCT TGTTGTGAATGTAGGGGACCTACTCCACATCTTATCAAACGGGTTGTACCCGAGTGTGCTCCACCGAGCGGTGGTTAACCGGACCAAGCATAGATTATCC ATTGCTTTCCTATATGGGCCACCATCAAGTGTTGAGATTTCTCCTTTACAAAAACTTGTAGGTCCTAATCATCCTCCCCTCTATAGGCCAGTCACTTGGA ACGAATACCTTGGCACCAAAGCTAAGTATTTCAACAAAGCATTATCATCTGTTAGGATTTGTGCTCCTCTAAATGGTCTGGCTGATGTAAACGATCATAA TAGGGTAAGAGTTGGTTAG
AA sequence Show only first row Show all	>Potri.001G176600.1 pacid=42792324 polypeptide=Potri.001G176600.1.p locus=Potri.001G176600 ID=Potri.001G176600.1.v4.1 annot-version=v4.1 MPSRSLLADAFRAHPVHVHQKHFDFTSLQEIPDSHKWTQIDDEEHPLVDPLNTESVPVIDLSDPNVLQNIGHACKTWGVLQVTNHGIPTSLLENIESASR SLFSLPIQQKLKAARSPDGVSGYGVARISSFFSKLMWSEGFTIVGSPLEHFRQLWSQDYTKFCDIIEEYKKEMQKLARRLTWLMLGSLGIAKKDLKWAGS TGESKKGSAALQLNYYPACPDPDQAMGLAAHTDSTLLTILYQSNTSGLQVLKEGIGWITVPPIPGGLVVNVGDLLHILSNGLYPSVLHRAVVNRTKHRLS IAFLYGPPSSVEISPLQKLVGPNHPPLYRPVTWNEYLGTKAKYFNKALSSVRICAPLNGLADVNDHNRVRVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.001G176600 [exp]	0	1	GA3ox1,Pt-LE.1
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Potri.002G127000 [exp]	14.96	0.8542
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.001G230600 [exp]	34.64	0.8590
AT2G20830			transferases;folic acid bindin...		Potri.013G145800 [exp]	37.13	0.8563
					Potri.009G016950 [exp]	42.35	0.8313
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.006G100500 [exp]	60.44	0.8439	Pt-PDX1.1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.002G255000 [exp]	62.09	0.8419	Pt-AMT1.3,5
					Potri.014G030700 [exp]	71.05	0.8389
AT1G18210			Calcium-binding EF-hand family...		Potri.014G030100 [exp]	73.53	0.7894
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.018G069100 [exp]	86.44	0.8273
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	95.66	0.8377	PRX1.12

Compare expression of checked genes

Potri.001G176600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.