Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BOT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80350 809 / 0 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 287 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 266 / 1e-83 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G27120 266 / 7e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 252 / 1e-77 AAA-type ATPase family protein (.1.2) AT3G19740 231 / 7e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 219 / 6e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G02890 220 / 1e-61 AAA-type ATPase family protein (.1.2) AT4G02480 218 / 3e-61 AAA-type ATPase family protein (.1) AT5G52882 214 / 9e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057800 [exp] 889 / 0 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 297 / 5e-96 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 292 / 8e-94 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G144300 [exp] 277 / 6e-88 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 274 / 2e-86 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 271 / 2e-85 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 270 / 4e-85 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 267 / 9e-84 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G331200 [exp] 263 / 1e-79 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023115 [exp] 821 / 0 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 816 / 0 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 295 / 8e-95 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 289 / 3e-90 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 276 / 3e-87 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 273 / 3e-86 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 261 / 4e-81 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 261 / 5e-81 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10041563 [exp] 253 / 1e-75 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038001 [exp] 241 / 1e-73 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0671 [poplar] [flax] AAA_lid PF09336 [poplar] [flax] Vps4_C Vps4 C terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G176900.1 pacid=42788641 polypeptide=Potri.001G176900.1.p locus=Potri.001G176900 ID=Potri.001G176900.1.v4.1 annot-version=v4.1 ATGGTGGGAAGTGCGAGTGGGAGCTCAACAGCAACAGCAACGGCGGCGTTAAGGGGGTTGCAAGATCACTTGAAATTGGCAAGAGAATACGCCCTTGGAG GCCTCTATGACACTTCCATTATCTTCTTCGACGGCGCCATTGCTCAGATCATCAAGCACCTTACCACGCTTGACGATCCATTAATTCGTACCAAATGGAT GAATCTCAAGAAATCCCTTTCCGAGGAGACTCAAGCTGTCAAAGAATTGGATGCTGAGAGGAGAGCTCTTAAGGAAGCTCCTGCTTCCAGGCGCGTTGCT TCTCCCCCCATTCATCCTAAATCTTCCTTTCTTTTCCAGCCTTTGGATGAGTACCCTTCGCCTTCTGCTGCTCCCATCGATGATCCTGATGTTTGGAGGC CCCCCAGTCGGGACACTGCCAGCAGGAGGCCTGCCAGGTCTGCTCAAGCGGGTATCAGGAAATCTCCCCAAGATGGGGTCTGGGCTCGTGGTGCTTCCAC AAGAACTTCTACTACTGGACGCGGTGCGAAAACGGGTGGTTCGGGTAGGGTAAACTCGGGAGTCAGAGCATCGACAACCGGAAAGAGAGGCACTTCCACT TCCACTGTCACTGGAAAACCAGGAAAAGGAGATTCAGCTAATGGTGATGCTGAAGATGGAAAGAAGAGGCCGCAATATGAGGGACCCGATCCTGACTTGG CTGAGATGCTTGAAAGGGATGTCTTGGAAACTAGTCCTGGAGTAAGATGGGATGATGTTGCTGGACTAAGCGAAGCGAAACGTCTTCTGGAGGAAGCTGT TGTCCTTCCTTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCTTGGAAAGGTGTGCTTATGTTTGGCCCTCCTGGTACCGGGAAGACATTACTT GCTAAAGCTGTTGCTACTGAGTGTGGTACAACATTTTTCAATGTTTCATCTGCGACATTAGCTTCAAAATGGCGTGGGGAGAGTGAACGAATGGTTCGAT GCTTATTTGATCTAGCACGAGCTTACGCACCAAGTACAATTTTCATTGATGAGATTGATTCTCTATGCAATGCCAGGGGGGCTTCAGGGGAGCATGAATC ATCTCGAAGGGTCAAGTCTGAACTTCTGGTCCAGGTAGATGGTGTAAACAATAGTTCCACTGGTGAAGATGGCAGTCGGAAAATAGTGATGGTTTTGGCA GCTACTAACTTTCCTTGGGACATAGATGAAGCACTAAGGAGGAGGTTGGAAAAGCGTATTTACATTCCGCTTCCAAAATTCGAGAGTCGTAAGGAGCTTA TTAGGATCAATTTGAAAACCGTTGAGGTGGCAACCGATGTAAATGTTGATGAAGTTGCTCGCAGGACAGAGGGATACAGTGGAGATGATTTAACGAATGT TTGCAGAGATGCTTCTTTAAATGGCATGAGACGCAAGATAGCAGGAAAGACGCGAGATGAAATTAAGAACATGCCTAAGGATGAGATTTCAAAGGATCCT GTTGCAATGTGTGATTTTGAAGAGGCCTTGCGGAAGGTTCAGCGCAGTGTTTCTCAAACAGATATTGAGAAGCATGAGAAGTGGTTCTCGGAATTTGGAT CAGCGTAA
AA sequence Show only first row Show all	>Potri.001G176900.1 pacid=42788641 polypeptide=Potri.001G176900.1.p locus=Potri.001G176900 ID=Potri.001G176900.1.v4.1 annot-version=v4.1 MVGSASGSSTATATAALRGLQDHLKLAREYALGGLYDTSIIFFDGAIAQIIKHLTTLDDPLIRTKWMNLKKSLSEETQAVKELDAERRALKEAPASRRVA SPPIHPKSSFLFQPLDEYPSPSAAPIDDPDVWRPPSRDTASRRPARSAQAGIRKSPQDGVWARGASTRTSTTGRGAKTGGSGRVNSGVRASTTGKRGTST STVTGKPGKGDSANGDAEDGKKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLL AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTGEDGSRKIVMVLA ATNFPWDIDEALRRRLEKRIYIPLPKFESRKELIRINLKTVEVATDVNVDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDP VAMCDFEEALRKVQRSVSQTDIEKHEKWFSEFGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.001G176900 [exp]	0	1	Pt-BOT1.1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.017G069300 [exp]	14.76	0.7126
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074300 [exp]	27.34	0.7070
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	28.24	0.7070
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	52.99	0.6875
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	72.66	0.6831
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	84.74	0.6414
AT2G41020			WW domain-containing protein (...		Potri.006G032200 [exp]	86.98	0.6734
AT1G79990			structural molecules (.1.2.3.4...		Potri.001G179500 [exp]	90.64	0.6264
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Potri.015G064400 [exp]	99.34	0.6764
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	117.99	0.6684

Compare expression of checked genes

Potri.001G176900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.