Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80360 574 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 127 / 7e-33 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT2G24850 60 / 1e-09 TAT3 tyrosine aminotransferase 3 (.1) AT4G26200 59 / 3e-09 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G20610 57 / 1e-08 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G36160 56 / 3e-08 Tyrosine transaminase family protein (.1) AT3G61510 52 / 3e-07 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G33680 52 / 6e-07 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28410 50 / 1e-06 Tyrosine transaminase family protein (.1) AT3G49700 47 / 2e-05 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079200 [exp] 119 / 2e-29 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 114 / 1e-27 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.014G124100 [exp] 97 / 4e-22 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G012600 [exp] 70 / 6e-13 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 67 / 8e-12 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 66 / 1e-11 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.003G117700 [exp] 62 / 4e-10 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.002G113900 [exp] 60 / 2e-09 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G013200 [exp] 59 / 2e-09 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023117 [exp] 666 / 0 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011479 [exp] 563 / 0 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 126 / 5e-32 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 124 / 2e-31 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10018962 [exp] 83 / 4e-17 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10008579 [exp] 63 / 2e-10 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10032695 [exp] 62 / 4e-10 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10010243 [exp] 58 / 6e-09 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10033820 [exp] 56 / 3e-08 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10013676 [exp] 52 / 4e-07 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01053 [poplar] [flax] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G177000.2 pacid=42787853 polypeptide=Potri.001G177000.2.p locus=Potri.001G177000 ID=Potri.001G177000.2.v4.1 annot-version=v4.1 ATGGGTTCCTATGTAAAGCTTGCTAAGAGAGCTGTGGAGACTGAAATGCCTATCATGGTTCAGATACAGGAATTGGTCCGAGGAGCGAAAAATGCTGTGT CCTTGGCCCAGGGAGTAGTTTATTGGCAACCACCCAAACAAGCATTGAATAAGGTGAAAGAACTTGTATGGGAGCCTTCAATTAGCCGTTATGGAGCTGA TGAAGGTATTCCTGAACTTAGGGAGGCATTGACACAGAAGTTACAAAAGGAAAATAAGTTGGTGAAATCTTCAGTCATGGTTACTGCAGGTGCAAATCAG GCATTCGTAAATCTTGTTCTTGCATTATGTGACGCTGGGGATTCTGTGGTTATGTTTGCTCCATACTATTTCAATGCATACATGTCTTTCCAGATGACTG GCGTCACTAATATACTGGTGGGTCCTGGCAACCCAGAGACACTTCATCCCGATGCAGACTGGTTAGAGAGAACATTATCAGAAGCAAAACCTGTTCCGAA GGTTGTCACAGTTGTTAACCCCGGTAACCCAAGTGGGACCTACATTCCAGATCCCCTTCTTAAGAGAATTTCAGATTTATGCAGAGAAGCTGGATCCTGG CTTATTGTAGATAATACATATGAGTATTTTATGTATGATGGTCTAAAACACTCGTGTATAGAAGGAGATCACGTTGTCAACATCTTTTCCTTCTCAAAAG CATATGGAATGATGGGATGGCGAGTTGGATATATAGCATATCCATCGGGAGTGGAAGGCTTTCAAACTCAACTTCTTAAAATTCAGGACAACATACCAAT CTGTGCTTCAATACTGTCTCAGCACCTTGCTCTCTATTCCTTAGAAATGGGACCTGAATGGGTGACCGAGCAAGTGAAAGATCTCGTCAAGAACAGGGAT ATAATTCTGGAAGCACTCTCCCCTCTGGGCGAAGGTGCTGTGAAGGGTGGAGAAGGAGCAATTTACCTATGGGCAAAGCTTCCAGAGCAATACGTGGATG ATGATAAAGTTGTTCGCTGGCTTGCTACAAGGCATGGGGTCATTGTGATTCCAGGAGGTGCGTGTGGATGTCCAGGGCACCTTAGGATCTCATTTGGGGG CTTGACAGAGAATGACTGTAAAGCTGCTGCAGAGAGACTAAGGAGAGGACTGGAAGATTTGGTAAGCAATGGGATTGTGCAGTGA
AA sequence Show only first row Show all	>Potri.001G177000.2 pacid=42787853 polypeptide=Potri.001G177000.2.p locus=Potri.001G177000 ID=Potri.001G177000.2.v4.1 annot-version=v4.1 MGSYVKLAKRAVETEMPIMVQIQELVRGAKNAVSLAQGVVYWQPPKQALNKVKELVWEPSISRYGADEGIPELREALTQKLQKENKLVKSSVMVTAGANQ AFVNLVLALCDAGDSVVMFAPYYFNAYMSFQMTGVTNILVGPGNPETLHPDADWLERTLSEAKPVPKVVTVVNPGNPSGTYIPDPLLKRISDLCREAGSW LIVDNTYEYFMYDGLKHSCIEGDHVVNIFSFSKAYGMMGWRVGYIAYPSGVEGFQTQLLKIQDNIPICASILSQHLALYSLEMGPEWVTEQVKDLVKNRD IILEALSPLGEGAVKGGEGAIYLWAKLPEQYVDDDKVVRWLATRHGVIVIPGGACGCPGHLRISFGGLTENDCKAAAERLRRGLEDLVSNGIVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	0	1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.007G056200 [exp]	3.46	0.8681
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	4.35	0.8918
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	6.48	0.8850
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	8.66	0.8803
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	10.19	0.8848
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	10.39	0.8365
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	12.24	0.8508
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	12.64	0.8890
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	14.42	0.8372
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	15.23	0.8759

Compare expression of checked genes

Potri.001G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.