Plant FIBer expression Database

Potri.001G177300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80380 573 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G058500
[exp]
695 / 0 AT1G80380 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018910
[exp]
499 / 5e-179 AT1G80380 469 / 6e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Lus10028609
[exp]
208 / 1e-64 AT1G80380 189 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.001G177300.5 pacid=42787774 polypeptide=Potri.001G177300.5.p locus=Potri.001G177300 ID=Potri.001G177300.5.v4.1 annot-version=v4.1
ATGGATACCCATTTCTTCTCCAAGTCAGGCAGTGGATATTCCTGGATTCAAGGCAGCTCCGTGCATCAGAACTCAACTTCCAGCAATAAAAGGATGCAGG
GTCCATTGTGTTCGGTGTTTCCCTCAACACCTGCACAAGTCTCTCCCGTGGAGGACCTTTACGAATTTATTTGCTCGGGTCCTCTTATAAGCAAGTTGGG
TTTGACCTCAGAAAGGATTGCTGACTCCATCGACAAGTGGTTATCACATGGCTCGCGCTTGTGCCGATTGTTTCAGCTTAATGAATTGTACCTTACTGCT
CCTCAGAAAGCAAGGTTGTATCACTATTATATACCGGTCTTTGTATGGTGTGAAGATAAGATTTCCAAGCACGTGTCCCAGTTCAAAGACTCGGAACATA
TACCTCCTTTAGTGATTGGTTTTAGTGCTCCACAAGGTTGTGGAAAGACCACACTTGTCTTTGCTCTTAGTTATCTCTTCCAGACAACTGGCAGGAAGTC
CGCAACATTATCCATAGATGATTTTTATTTAACGGCAGAGGGTCAGGCCAATCTAAGAGAAGCCAATCCAGGAAATGCGCTTCTAGAGTTTCGAGGAAAT
GCTGGGAGTCATGATCTTCCATTCTCAATTGAAACACTGTCTGCTTTAAGCAAACTGAAGAAAGCAGGTATGAACATGAAGCTGCCTCGATATGATAAAT
CTGCATACAGTGGAAGAGGTGACAGAGCTGATCCTTCAACATGGCCAGAGGTTGAAGCACCATTAACAGTGGTTCTATTTGAAGGTTGGATGCTTGGTTT
TAAACCACTTCCAGTGGAAGTCGTCCAAGCAGTTGATCCTCAGGTTAATTTTATTTACAAGTGCCTCGGGATACTCTTCATACAGCTAGAGATCGTAAAT
AAGAATCTTGAAGCTTATTATGATGCATGGGACAAGTTCGTTAAGGCATGGGTAGTCATCAAGATTCAGGACCCTAGTTGTGTCAACCAATGGCGTTTGC
AGGCAGAGATTGCCATGAGGGAGGCAGGCAACCCCGGGATGACTGATGAAGAGGTCAAAGATTTCGTTTCTCGTTACCTACCAGCATACAAGGCTTACCT
TCCCACCCTTTATGCTGAAGGACCCAGGGGTTCACATCCAGAGAATCTCCTCCTCATCGAAATTGATGAAGGAAGAAATCCTATCCTAGGTAATTAG
AA sequence
>Potri.001G177300.5 pacid=42787774 polypeptide=Potri.001G177300.5.p locus=Potri.001G177300 ID=Potri.001G177300.5.v4.1 annot-version=v4.1
MDTHFFSKSGSGYSWIQGSSVHQNSTSSNKRMQGPLCSVFPSTPAQVSPVEDLYEFICSGPLISKLGLTSERIADSIDKWLSHGSRLCRLFQLNELYLTA
PQKARLYHYYIPVFVWCEDKISKHVSQFKDSEHIPPLVIGFSAPQGCGKTTLVFALSYLFQTTGRKSATLSIDDFYLTAEGQANLREANPGNALLEFRGN
AGSHDLPFSIETLSALSKLKKAGMNMKLPRYDKSAYSGRGDRADPSTWPEVEAPLTVVLFEGWMLGFKPLPVEVVQAVDPQVNFIYKCLGILFIQLEIVN
KNLEAYYDAWDKFVKAWVVIKIQDPSCVNQWRLQAEIAMREAGNPGMTDEEVKDFVSRYLPAYKAYLPTLYAEGPRGSHPENLLLIEIDEGRNPILGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80380 P-loop containing nucleoside t... Potri.001G177300
[exp]
0 1
AT2G03670 CDC48B cell division cycle 48B (.1) Potri.001G128700
[exp]
5.00 0.8325 Pt-CDC48.1
Potri.001G432540
[exp]
14.73 0.8581
AT3G04940 ATCYSD1 cysteine synthase D1 (.1) Potri.005G048066
[exp]
19.84 0.7533
AT4G27190 NB-ARC domain-containing disea... Potri.001G429430
[exp]
20.00 0.8604
AT3G14470 NB-ARC domain-containing disea... Potri.014G003350
[exp]
26.26 0.8274
Potri.001G432333
[exp]
29.24 0.8537
AT4G27190 NB-ARC domain-containing disea... Potri.001G429890
[exp]
30.16 0.8433
AT4G27190 NB-ARC domain-containing disea... Potri.001G434000
[exp]
31.08 0.8433 Pt-RGA-II24.63
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Potri.001G023900
[exp]
38.01 0.8415
AT5G36930 Disease resistance protein (TI... Potri.019G052000
[exp]
40.98 0.8327

Potri.001G177300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.