Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 342 / 3e-115 FATB fatty acyl-ACP thioesterases B (.1) AT4G13050 223 / 2e-69 Acyl-ACP thioesterase (.1) AT3G25110 218 / 3e-67 ATFATA fatA acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G177900 [exp] 786 / 0 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 363 / 4e-123 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 363 / 4e-123 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 358 / 2e-121 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 284 / 1e-92 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 277 / 5e-90 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 257 / 4e-82 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 253 / 1e-80 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 209 / 6e-64 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017751 [exp] 373 / 6e-127 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 372 / 8e-127 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 305 / 3e-101 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10035901 [exp] 298 / 2e-98 AT1G08510 269 / 7e-87 fatty acyl-ACP thioesterases B (.1) Lus10025762 [exp] 297 / 8e-98 AT1G08510 268 / 2e-86 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 296 / 1e-97 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 253 / 3e-80 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 251 / 3e-79 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 241 / 7e-76 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 240 / 2e-75 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01643 [poplar] [flax] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Potri.001G177600.2 pacid=42791471 polypeptide=Potri.001G177600.2.p locus=Potri.001G177600 ID=Potri.001G177600.2.v4.1 annot-version=v4.1 ATGATGTTTTCACTGATATTGCCTTCCTCCAGCAAAACAATGAGTTTGTCGGGGACGCCTAATTATAGCTCGACTGTTGGCGGAAGAAGGGCCGATTTTA GCACAATTGCTAGTGGCTTTCCAGTGAAGGTACACGTCCAAACCCTTCTCAGGAAAACATCTAGCAGTCTACAATCACCCGCAAATAGCATGAAGCATGA GATGGATATAACTTCCGCACCAGAGAGAAAGCTGGTAAAACAATTCATGCGTGCTTCAAACACGCATTCTTTTGTTGCGGACAGTACTCCTGCAGTCAAT GGGAAATATCAGAAACTCACTGAAGATTGGGAATCAAAGAAGCTTGATTTGATAACCGGTGGAAGGTTGCTTCAAGATGGCCTTGTTTACAGGCAAAACA TTTCGGTTAGATCTTTTGAAATAGGCGGTGACAGAAAAATGTCCTTTGGTGCCTTGCTGAATCACTTACAGGATACTGCACTTAACCAAAGTAGAATTAC AGGGCTAATAGCGGATGGTTTTGGTTCAACACGAGAGATGAGTAGAAATAACCTTATATGGGTAGTTTCAACTCTGCATATAGTAGTGGATCGCTATCCT ACCTGGACTGATGTTGTTGAAGTAGACACTTGGATGTATGCGTCGGGAAAGAATGGTCTGGGTCGTGACTGGATATTTCGTGACAGCAAGACTGGTGAAA CTCTTGCTACCGCAACCAGCGTATACGTGATGATGAATAAGAAAACGAGGAGATTGTCCAAGTTTGCCAAGGAAATGAGGGATGAAATTGAGCCTTATTT AATGGATTGTGAGTGTCCCATCATCAATAAGGATAGCAGAAAAATACTGAAACTTGATGTTAGCACAGCAGATAAAATATGCACAGGTTTATCACCTGGA TGGAACGACATGGATATCAATCAGCATGTGAGCAATGTAAAGTATATTGACTGGATTCTTGAGAGCGTTCCCCGTTCATTTATGGAGCGTTACTACCTCA ACGCAATGACTCTGGAATACAAGAAGGAGTGTGACATGGACAGTGTGTTGCAGTCTCTCTCCAAAATGGTTGGTGGAGGCAATAGCGATTCCTTCAACGC GAATAAGGTGATGGAGTATGATCACATGCTTCGTCTCGAGAATGGACGCGAGATCCTGAGAGGAAGGACCGTGTGGAAGCTTAAAGACACGAACAGCTGC GTCAATAATTATATATATTGA
AA sequence Show only first row Show all	>Potri.001G177600.2 pacid=42791471 polypeptide=Potri.001G177600.2.p locus=Potri.001G177600 ID=Potri.001G177600.2.v4.1 annot-version=v4.1 MMFSLILPSSSKTMSLSGTPNYSSTVGGRRADFSTIASGFPVKVHVQTLLRKTSSSLQSPANSMKHEMDITSAPERKLVKQFMRASNTHSFVADSTPAVN GKYQKLTEDWESKKLDLITGGRLLQDGLVYRQNISVRSFEIGGDRKMSFGALLNHLQDTALNQSRITGLIADGFGSTREMSRNNLIWVVSTLHIVVDRYP TWTDVVEVDTWMYASGKNGLGRDWIFRDSKTGETLATATSVYVMMNKKTRRLSKFAKEMRDEIEPYLMDCECPIINKDSRKILKLDVSTADKICTGLSPG WNDMDINQHVSNVKYIDWILESVPRSFMERYYLNAMTLEYKKECDMDSVLQSLSKMVGGGNSDSFNANKVMEYDHMLRLENGREILRGRTVWKLKDTNSC VNNYIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	0	1
					Potri.004G021901 [exp]	1.41	0.8789
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	4.89	0.8218
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	6.24	0.7957
AT1G08440			Aluminium activated malate tra...		Potri.001G217400 [exp]	8.94	0.8522
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	10.95	0.8003
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	12.64	0.7851	RAP15
AT3G10330			Cyclin-like family protein (.1...		Potri.015G067500 [exp]	12.68	0.7767	TFIIB1.1
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	14.07	0.8116
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.007G083300 [exp]	14.28	0.7833
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235600 [exp]	15.58	0.7647

Compare expression of checked genes

Potri.001G177600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.