Plant FIBer expression Database

Potri.001G177700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80410 614 / 0 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178000
[exp]
890 / 0 AT1G80410 1332 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Potri.003G056700
[exp]
780 / 0 AT1G80410 1285 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011474
[exp]
663 / 0 AT1G80410 1341 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Lus10023111
[exp]
660 / 0 AT1G80410 1337 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF12569 NARP1 NMDA receptor-regulated protein 1
Representative CDS sequence
>Potri.001G177700.2 pacid=42790210 polypeptide=Potri.001G177701.1.p locus=Potri.001G177700 ID=Potri.001G177700.2.v4.1 annot-version=v4.1
ATGGATCTTGCAGATCGATATATAAACAGTGAATGTGTTAAACGTATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAACTGCTGTTTTGTTTACAA
AAGATGGGGATCAGCACAATAACCTTCATGACATGCAGTGCATGTGGTATGAACTTGCATCTGGTGAGAGTTACTTCCGTCAAGGTGATCTTGGGCGGGC
TTTGAAGAAGTTTTTAGCAGTGGAGAAGCACTATGCAGATATAACTGAAGATCAATTTGACTTCCATTCCTATTGTTTAAGGAAAATGACTCTACGAGCC
TATGTGGCAATGCTCAAATTTCAAGATCGTTTGCATTCACATGCATATTTCCACAAAGCAGCAGCTGGAGCTATCAGATGTTACATAAAATTGTTTGACT
CTACTTCAAAGTCAACAGCTGAAGAAGATGATGAAATGTCAAAGTTGCCTCCTTCTCAGAGAAAGAAGATGAGGCAAAAACAGAAAAAGGCAGAAGCCCG
AGCTAAGAAAGAGGCTGAGGTGAGAAATGAAGAATCAAGTGCCAGTGGTGTTTCTAAGTTGGGTAAGCGGCACGTTAAACCTGTAGATCAAGATCCAAAT
GGGGAAAAATTATTGCAGGTTGAAGATCCATTGTTGGAAGCTACAAAGTACTTGAAGCTGCTTCAGAAACATTCACCTGACTCTTTGGAGACACACTTGC
TTTCTTTCAATGTAAATATGAGAAAGAAAAAAATTCTACTCGCTCTTCAGGCTGTAAAGCAATTGCTAAGGTTGGATGCTGAAAGTGCTGATTCCCATCG
CTGCTTGGTTAGATTCTTCCATACAGTGGGCACAATGACTGCTCCCGTGACAGATACTGAGAAACTTGTTTGGAGTGTCTTGGAAGCAGAGCGTCCATTG
ATTAGTCAATTGCATGAGAAATCTCTCACTGAAGCAAATATGATTTTCTTTGAAAAACATGAAGATTCTTTAATGCATAGAGCTGCAGTGGCTGAAATGC
TATCTGTCTTGGAACCTAACAAGAAACTAGAGGCTGTTAAATTAATTGAAGATTCAACCAACGACCCTGCACCAACAAATGGAGCACTTGGACCAGTCAA
TGAATGGAAACTCAAAGACTGTATTGCAGTCCACAAGCTCCTAGTAGAAGTTCTTAATGACCCAGATGCTGCATTGAGGTGGAAATTGCGTTGTGCCCAA
TACTTCCCTTGCTCAACATACTTTGAAGGCAAGTGCAGCTCAGCTGCATCCAATTCAGTGTACGGTCAGATTGCCAAGAGCCCTGAGAATGGAGGCTCAA
ACCATTCTGATGGTGGTGAAATTGCAGATTTTGTTGAATCAAATGGAAAGCTGGAAACTTTCAAGGATCTTACCATCAGAACATGA
AA sequence
>Potri.001G177700.2 pacid=42790210 polypeptide=Potri.001G177701.1.p locus=Potri.001G177700 ID=Potri.001G177700.2.v4.1 annot-version=v4.1
MDLADRYINSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRA
YVAMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSTSKSTAEEDDEMSKLPPSQRKKMRQKQKKAEARAKKEAEVRNEESSASGVSKLGKRHVKPVDQDPN
GEKLLQVEDPLLEATKYLKLLQKHSPDSLETHLLSFNVNMRKKKILLALQAVKQLLRLDAESADSHRCLVRFFHTVGTMTAPVTDTEKLVWSVLEAERPL
ISQLHEKSLTEANMIFFEKHEDSLMHRAAVAEMLSVLEPNKKLEAVKLIEDSTNDPAPTNGALGPVNEWKLKDCIAVHKLLVEVLNDPDAALRWKLRCAQ
YFPCSTYFEGKCSSAASNSVYGQIAKSPENGGSNHSDGGEIADFVESNGKLETFKDLTIRT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.001G177700
[exp]
0 1
AT1G51740 ATSYP81, SYP81,... ORTHOLOG OF YEAST UFE1 \(UNKNO... Potri.008G063100
[exp]
2.44 0.8962 SYP81.1
AT1G71840 transducin family protein / WD... Potri.013G116900
[exp]
2.44 0.9207
Potri.012G066225
[exp]
5.74 0.8890
Potri.009G065201
[exp]
7.74 0.8366
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.004G095000
[exp]
8.88 0.8029
AT1G10417 unknown protein Potri.008G190600
[exp]
10.00 0.8843
AT3G59890 Dihydrodipicolinate reductase,... Potri.017G001900
[exp]
10.24 0.7920
AT1G19880 Regulator of chromosome conden... Potri.002G025600
[exp]
11.74 0.8094
AT5G38560 AtPERK8 proline-rich extensin-like rec... Potri.017G110400
[exp]
12.48 0.8329
AT1G73240 unknown protein Potri.003G213050
[exp]
15.00 0.8577

Potri.001G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.