Plant FIBer expression Database

Potri.001G178000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80410 1332 / 0 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G056700
[exp]
1604 / 0 AT1G80410 1285 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Potri.001G177700
[exp]
885 / 0 AT1G80410 613 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Potri.001G177802
[exp]
74 / 2e-16 AT1G80410 61 / 4e-13 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011474
[exp]
1417 / 0 AT1G80410 1341 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Lus10023111
[exp]
1413 / 0 AT1G80410 1337 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF07719 TPR_2 Tetratricopeptide repeat
CL0020 TPR PF12569 NARP1 NMDA receptor-regulated protein 1
Representative CDS sequence
>Potri.001G178000.2 pacid=42789468 polypeptide=Potri.001G178000.2.p locus=Potri.001G178000 ID=Potri.001G178000.2.v4.1 annot-version=v4.1
ATGGGAGCTTCTCTGCCTCCCAAAGAGGCTAACCTCTTCAAGCTCATCGTCAAATCATATGAAAGTAAACAGTACAAGAAGGGACTGAAGGCAGCAGATG
CTATCTTGAAGAAGTTTCCAGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTAAATTGCATGGATCGAAAATCTGAAGCATATGATCTTGTTCG
ACTTGGCCTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGCCTTCTTTACCGTTCTGACCGAGAGTATAGGGAGGCCATCAAATGCTAT
CGAAATGCATTGAGAATAGATCCAGACAATATTGAAATACTGAGGGACTTGTCACTCTTGCAGGCTCAAATGCGGGACCTAACAGGTTTCGTTGAGACAA
GACAACAACTTCTATCCCTGAAACCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCCCATCATTTGAACTCAAATGGTTCAAAAGCAGTTGAAAT
TCTTGAAGCATATGAAGGGACACTGGAAGATGATTATCCTCCAGATAATGAACGATGTGAGCATGGGGAAATGCTTTTGTATAAGATCTCTTTATTAGAG
GAATGCGGTTCTCTTGAGAGAGCTCTAGAGGAGTTGCATAAGAAAGAGTCGAAAATTGTTGATAAACTGACTCTTAAAGAACAAGAGGTTTCTCTATTAG
TGAAGCTTGGCCATCTTGAAGAAGGTGCTGAAGTGTACAGGGCATTACTTTCCATTAATCCTGACAACTACAGGTATTGTGAAGGCCTACAAAAATGTGT
TGGGTTGTATTCGGAAAATGGTCTTTCCTCTTCTGATATTGATCAATTAGATGCCTTGTACAAATCACTTGGGCAGCAATACACTTGGTCATCTGCTGTT
AAGAGAATACCGCTTGATTTTCTACAAGGTGACAAGTTTCATGAAGCTGCAGATAACTATATTAGGCCCCTCCTGACGAAGGGAGTTCCTTCATTATTCT
CAGATCTTTCACCACTATACAATCACCCTGGAAAGGCAGACATACTGGAGAAACTCATTCTTGAACTGGAGAATTCACTTAGGATAAGTGGGGGATACCC
TGGGAGGCCAGAAAAAGAGCCTCCTTCAACACTTATGTGGACCTTGTTTTTCTTGGCTCAGCATTACGACAGACGGGGACAGTATGATGTTGCTCTTAGT
AAAATTGACGAGGCTATAGGGCACACTCCAACTGTGATTGATTTATATTCTGTCAAGAGCCGCATTCTGAAGCATGCCGGTGATTTGCCAGCTGCTGCCA
CTTTGGCAGATGAAGCTAGATGTATGGATCTTGCAGATCGATATATAAACAGTGAATGTGTTAAACGTATGCTGCAGGCTGATCAGGTGGCTTTGGCAGA
AAAAACTGCTGTTTTGTTTACAAAAGATGGGGATCAGCACAATAACCTTCATGACATGCAGTGCATGTGGTATGAACTTGCATCTGGTGAGAGTTACTTC
CGTCAAGGTGATCTTGGGCGGGCTTTGAAGAAGTTTTTAGCAGTGGAGAAGCACTATGCAGATATAACTGAAGATCAATTTGACTTCCATTCCTATTGTT
TAAGGAAAATGACTCTACGAGCCTATGTGGCAATGCTCAAATTTCAAGATCGTTTGCATTCACATGCATATTTCCACAAAGCAGCAGCTGGAGCTATCAG
ATGTTACATAAAATTGTTTGACTCTCCTTCAAAGTCAACAGCTGAAGAAGATGATGAAATGTCAAAGTTGCCTCCTTCTCAGAGAAAGAAGATGAAGCAA
AAACAGAAAAAGGCAGAAGCCCGAGCTAAGAAAGAGGCTGAGGTGAGAAATGAAGAATCAAGTGCCAGTGGTGTTTCTAAGTTGGGTAAGCGGCACGTTA
AACCTGTAGATCCAGATCCAAATGGGGAAAAATTATTGCAGGTTGAAGATCCATTGTTGGAAGCTACAAAGTACTTGAAGCTGCTTCAGAAACATTCACC
TGACTCTTTGGAGACACACTTGCTTTCTTTCAATGTAAATATGAGAAAGAAAAAAATTTTACTCGCTCTTCAGGCTGTAAAGCAATTGCTAAGGTTGGAT
GCTGAAAGTGCTGATTCCCATCGCTGCTTGGTTAGATTCTTCCATACGGTGGGCACAATGACTGCTCCCGTGACAGATACTGAGAAACTTGTTTGGAGTG
TCTTGGAAGCAGAGCGTCCATTGATTAGTCAATTGCATGAGAAACCTCTCACTGAAGCAAATATGATTTTCTTTGAAAAACATGAAGATTCTTTAATGCA
TAGAGCTGCAGTGGCTGAAATGCTATCTGTCTTGGAACCTAACAAGAAACTAGAGGCTGTTAAATTAATTGAAGATTCAACCAACAACCCTGCACCAACA
AATGGAGCACTTGGACCAGTCAATGAATGGAAACTCAAAGACTGTATTGGAGTCCACAAGCTCCTAGTAGAAGTTCTTAATGACCCAGATGCTGCATTGA
GGTGGAAATTGCGTTGTGCCCAATACTTCCCTTGCTCAACATACTTTGAAGGCAAGTGCAGCTCAGCTGCATCGAATTCAGTGTACGGTCAGATTGCCAA
GAACCCTGAGAATGGAGGCTCAAACCATTCTGATGGTGGTGAAATTGCAGATTTTGTTGAATCAAATGGAAGGCTGGAAACTTTCAAGGATCTTACCATC
TGA
AA sequence
>Potri.001G178000.2 pacid=42789468 polypeptide=Potri.001G178000.2.p locus=Potri.001G178000 ID=Potri.001G178000.2.v4.1 annot-version=v4.1
MGASLPPKEANLFKLIVKSYESKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYDLVRLGLKNDLKSHVCWHVYGLLYRSDREYREAIKCY
RNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLSLKPNHRMNWIGFAVAHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLE
ECGSLERALEELHKKESKIVDKLTLKEQEVSLLVKLGHLEEGAEVYRALLSINPDNYRYCEGLQKCVGLYSENGLSSSDIDQLDALYKSLGQQYTWSSAV
KRIPLDFLQGDKFHEAADNYIRPLLTKGVPSLFSDLSPLYNHPGKADILEKLILELENSLRISGGYPGRPEKEPPSTLMWTLFFLAQHYDRRGQYDVALS
KIDEAIGHTPTVIDLYSVKSRILKHAGDLPAAATLADEARCMDLADRYINSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYF
RQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVAMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPSKSTAEEDDEMSKLPPSQRKKMKQ
KQKKAEARAKKEAEVRNEESSASGVSKLGKRHVKPVDPDPNGEKLLQVEDPLLEATKYLKLLQKHSPDSLETHLLSFNVNMRKKKILLALQAVKQLLRLD
AESADSHRCLVRFFHTVGTMTAPVTDTEKLVWSVLEAERPLISQLHEKPLTEANMIFFEKHEDSLMHRAAVAEMLSVLEPNKKLEAVKLIEDSTNNPAPT
NGALGPVNEWKLKDCIGVHKLLVEVLNDPDAALRWKLRCAQYFPCSTYFEGKCSSAASNSVYGQIAKNPENGGSNHSDGGEIADFVESNGRLETFKDLTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.001G178000
[exp]
0 1
AT4G39850 AtABCD1, ACN2, ... PEROXISOME DEFECTIVE 3, COMATO... Potri.007G092200
[exp]
2.82 0.8729
AT1G14850 NUP155 nucleoporin 155 (.1) Potri.008G134800
[exp]
3.87 0.8622
AT5G35910 Polynucleotidyl transferase, r... Potri.019G038701
[exp]
4.89 0.8565
AT3G52140 tetratricopeptide repeat (TPR)... Potri.001G271200
[exp]
8.48 0.8494
AT5G53620 unknown protein Potri.015G006700
[exp]
15.90 0.8209
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
19.77 0.8272
AT1G80070 EMB33, EMB177, ... ABNORMAL SUSPENSOR 2, EMBRYO D... Potri.003G031900
[exp]
20.83 0.8557 Pt-EMB177.4
AT4G29860 EMB2757, TAN TANMEI, EMBRYO DEFECTIVE 2757,... Potri.009G002100
[exp]
22.22 0.8055
AT5G11530 EMF1 embryonic flower 1 (EMF1) (.1) Potri.018G039500
[exp]
24.37 0.8253
AT5G47010 ATUPF1, UPF1, L... LOW-LEVEL BETA-AMYLASE 1, RNA ... Potri.003G086400
[exp]
24.89 0.8481

Potri.001G178000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.