Plant FIBer expression Database

Potri.001G178100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80420 339 / 2e-115 ATXRCC1 BRCT domain-containing DNA repair protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G182500
[exp]
49 / 5e-06 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035899
[exp]
371 / 9e-128 AT1G80420 333 / 4e-113 BRCT domain-containing DNA repair protein (.1.2.3.4)
Lus10025764
[exp]
370 / 1e-127 AT1G80420 326 / 3e-110 BRCT domain-containing DNA repair protein (.1.2.3.4)
Lus10000854
[exp]
43 / 0.0003 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
Lus10028677
[exp]
42 / 0.0006 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0459 BRCT-like PF00533 BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence
>Potri.001G178100.5 pacid=42787678 polypeptide=Potri.001G178100.5.p locus=Potri.001G178100 ID=Potri.001G178100.5.v4.1 annot-version=v4.1
ATGTCGGATTCAAAGAGAAGTGGTGGAGGGGGTAGTAGTAAAAAGCGAAATCTTCCTTCATGGATGAGTTCCAAAGACAATGAGAATAAATCTCATGGGA
AGAAGGCAGCAGCAACTTCTGCCGAAGACGAACAATCTAAACTTCTGGACGGTGTGGTGTTTGTATTGTCCGGCTTTGTTAATCCTGAGCGTGCTACATT
GCGGTCCCAGGCTTTAGAAATGGGAGCGGAGTATCGACCAGACTGGACCTCAGATTGCACTCTCTTGGTTTGTGCTTATTCAAATACTCCAAAGTTTCGA
CAAGTTGAGGCGGATTGTGGAACCATTGTTAAGAAGGAATGGATACTAGAGTGTTACAGCCAAAAGAAGCTAGTTGAAATTGATAGTTATCTTATGCATG
CTGGGAAACCTTGGCGGAAATCCAATATTTCTCACGAAAGAGGCAGTGATCAAAAGGCATCCCCACCTAGAAAATCTGACAAACAGGTCAAAAGCGGGTT
GCATTCGAAGCCAACTGCCTCTACATCCTACAAGGTTAGAGCATCTAATCCCTCTAAAGAGTGCTTCTCTCCTTCTAAAGTGAAGGAGTGGGTTATTGAC
GATTTGAATAGAACCATCTCATGGCTGGAGAGTCAAGAGGAAAAGCCAGAGCCAAGCGAGATTAAACAAATAGCTGCAGAAGGCATCTTAATTTGCTTAC
AAGATGCCATAGATTTCCTTGAACAAAATCAGGATGTCCGGAAAATAACAGATCAGTGGAATGTTGTCCCTCACGCAGTTGAGGAGATGGTAAAGCTTGT
AGATGGTGGAAATGCTTCATCTTCTCTTTCAAAGGAAGATCTTTGCAGGAAGGCGAAGGCATGTAAAGAAATCTATGAAGCAGAACTGAGCAGTTTAGAT
GGTTCAAAGAGTAAGAAACAAAGGTTGAAAAGTGATGAAAGTGGGAGTAGTAAAAGGACAAACACCGTCACTGGTGATGCAGCAGAGTATGACAGCGATG
AAACAATTGAAATGACAAAGGAGGAAGTTGACATGGCGTACAATACTGTTGCTTCTAAATTTTTAAATGATTAG
AA sequence
>Potri.001G178100.5 pacid=42787678 polypeptide=Potri.001G178100.5.p locus=Potri.001G178100 ID=Potri.001G178100.5.v4.1 annot-version=v4.1
MSDSKRSGGGGSSKKRNLPSWMSSKDNENKSHGKKAAATSAEDEQSKLLDGVVFVLSGFVNPERATLRSQALEMGAEYRPDWTSDCTLLVCAYSNTPKFR
QVEADCGTIVKKEWILECYSQKKLVEIDSYLMHAGKPWRKSNISHERGSDQKASPPRKSDKQVKSGLHSKPTASTSYKVRASNPSKECFSPSKVKEWVID
DLNRTISWLESQEEKPEPSEIKQIAAEGILICLQDAIDFLEQNQDVRKITDQWNVVPHAVEEMVKLVDGGNASSSLSKEDLCRKAKACKEIYEAELSSLD
GSKSKKQRLKSDESGSSKRTNTVTGDAAEYDSDETIEMTKEEVDMAYNTVASKFLND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80420 ATXRCC1 BRCT domain-containing DNA rep... Potri.001G178100
[exp]
0 1
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Potri.010G219200
[exp]
1.00 0.7936
AT4G33280 B3 REM16 AP2/B3-like transcriptional fa... Potri.002G129800
[exp]
13.60 0.7173
AT4G27585 SPFH/Band 7/PHB domain-contain... Potri.012G011345
[exp]
25.45 0.6574
AT2G19930 RNA-dependent RNA polymerase f... Potri.007G081300
[exp]
27.92 0.7082
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.019G125400
[exp]
50.94 0.6986
AT2G42040 unknown protein Potri.016G058000
[exp]
60.06 0.6904
AT3G03305 Calcineurin-like metallo-phosp... Potri.010G180800
[exp]
68.12 0.6747
AT3G57320 unknown protein Potri.006G046800
[exp]
68.99 0.6788
AT5G13340 unknown protein Potri.019G001900
[exp]
89.64 0.6829
AT5G01780 2-oxoglutarate-dependent dioxy... Potri.016G132300
[exp]
118.05 0.6592

Potri.001G178100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.