Plant FIBer expression Database

Potri.001G178200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15660 125 / 1e-29 CENP-C CENP-C HOMOLOGUE, centromere protein C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G056600
[exp]
855 / 0 AT1G15660 230 / 2e-65 CENP-C HOMOLOGUE, centromere protein C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011470
[exp]
346 / 7e-109 AT1G15660 226 / 8e-64 CENP-C HOMOLOGUE, centromere protein C (.1)
Lus10023105
[exp]
219 / 3e-61 AT1G15660 232 / 5e-66 CENP-C HOMOLOGUE, centromere protein C (.1)
PFAM info
Representative CDS sequence
>Potri.001G178200.1 pacid=42790914 polypeptide=Potri.001G178200.1.p locus=Potri.001G178200 ID=Potri.001G178200.1.v4.1 annot-version=v4.1
ATGAACTTGGAGGATCCTCTGCAGAGATACAGCGGATTGTCTCTCTTACACAGATCATTAGGTTCTCTTTCGAAGCCTCCTTGTGACCCCGATCCTCATC
ACGATGATGATCTTCTCTCCGCCCACAATTTCCTCAAATCCCTGCCTGTCAAAAATTCTGATAAACTTGTAGAGCAGGCGAAAAGTATTTTAGATGCTAC
TTCAGGACTTGTCAATGCGGACTTGCCAAATGATGCAATGCCTGAAGATAAAATTGAAGTTGTTGTTCAAAAGGCCGCGGAAAGTCCCCGGGCACGAAGA
CCGGGTTTAGGGCGTAAGCGTGCTCGGTTTTCTTTGATTCATAATTCAAGTCAACCTAGTGTGATTTTGGAACCAACTTTGGATATGGATAACCTGAAAG
ACCCAGAGCAATTCTTCTTGGCTTTTGAAAGACTTGAAGATGCTAAAAAAGAAATGGCAAAACAGACAGGTCGTGTTTCAATTGGTTCCAATCAATCCAG
TATGGCAATGGCTCCACGGCCTCGTCGACCTGGAATGCCTGGGAGATCTAGGACAGTTAAATATCAACATCTCTATCCAACCATGTCCTTCCAGGAAACT
TCTATAGAAGACATTCTTAGTCCATCTAATCCTGGCTCACAACAAGAAACAGTCAGTCAAGCTGTTGCATTACAACTAATGGAATCGACAAATGTTGCCT
TAGAAGAATCAGAACTAGCTGCGTCAATGGCCAAGGCTGAGAAAAGGGTAGATAAACTTCTAGATGAGTTGCTTGCCTGTGATTGTGAAGAGCTGGATGG
GGATGGGGCAGTCACTTTGTTACAGGACCGCTTGCAGGTCAAGTCACTTGACATAGAGAAGTTGAACCTCCCTGAACTGCTTTATGTACAAAGGACCAAT
TTGAACGCATTGGGAGGGAATTTGCCAAAGCCTAGGAATGTGTTATCACATATACATAATTTACCGAGAAGGACTTTAACTCCTATGAAGCAGCAAATTG
CAGGAAATTCTACTTCCAGTTTTGGCTCGCCTGCTCCACCAAAAAGTCAACTGGCCTCGCTAGCATTATTGAGGAAACACATACTACAGTCAAATCCACC
AACAAATCCAGTGCTGAAGTCTCTAATAATTGAAGAAGATGACACAACAGCTGGTAATAGTAGTCCAACTGAGGTGGCTGTTAAAGCTCTGAATGACAAT
TTGACAAGTCTTGGTTCAGGTAGTGATGTTCGTCCTAGTAAATCTAGTGCTGAGGTGGAGAATAGCAATGTTGGTGTGGATAATGGAATCACGTATGAAT
ATTTAAGTCAGCTTGGTGGTGATGCGGATGTTCAAACAAATGGGCCAAATGAACTGGAGGACATGGTAGAAGATATTCAGCAGAAAGCTGTAGATAAATC
TCTGAACGGCAATTTGAGTAGTCTTGGTTCTGGTAGTATTGTTTGTCCTAGCAAAACCAGTGCTGAGGTGGAGAATAGCAACATTGGTGTGGATGATGGG
GTCATAGATGAGAATTCAAGTCTGCGTGGTGGTGATGTGGATATTCAAACAAACAGGCGAAATGAACTGGAGGATATGCCTGAAGACACAGCCATGGAGT
ATTTGAACCCACGGGATCAGTTTGAACAATTAAGTGCTGCATTTGTTGAAGACCATGCAATGGATAGTTGTCCCGAAACCCAAGACAGGGACCTAGAACA
AACCAAAGCCAACACCCCGAAACATAATAATGAGAGGGTGGAGAAACCTCCTGTGGTATCAACAAATAAACAAACCAAAGAAAAATCATGTACAGCCAAA
GGACGCAAGTATAGATCACTCTCTAGGAGGCAAAGCCTTGCAGCTTCTGGTACATCATGGGAAACAGGAGTGAGGCGAAGCACCAGGATTAGATCAAGAC
CTTTGGAGTATTGGAAAGGGGAAAGATTTTTATATGGTCGCATTCACGGGAGTTTGGCTACTGTAATTGGGATAAAGTACGAGTCACCCCAAAATGATAA
AGGAAAACCTGCTCTCAAGGTGAAGTCTTTTGTCTCTGATGAATACAAGAATTTGGTTGAACTAGCTGCTCTGCATTGA
AA sequence
>Potri.001G178200.1 pacid=42790914 polypeptide=Potri.001G178200.1.p locus=Potri.001G178200 ID=Potri.001G178200.1.v4.1 annot-version=v4.1
MNLEDPLQRYSGLSLLHRSLGSLSKPPCDPDPHHDDDLLSAHNFLKSLPVKNSDKLVEQAKSILDATSGLVNADLPNDAMPEDKIEVVVQKAAESPRARR
PGLGRKRARFSLIHNSSQPSVILEPTLDMDNLKDPEQFFLAFERLEDAKKEMAKQTGRVSIGSNQSSMAMAPRPRRPGMPGRSRTVKYQHLYPTMSFQET
SIEDILSPSNPGSQQETVSQAVALQLMESTNVALEESELAASMAKAEKRVDKLLDELLACDCEELDGDGAVTLLQDRLQVKSLDIEKLNLPELLYVQRTN
LNALGGNLPKPRNVLSHIHNLPRRTLTPMKQQIAGNSTSSFGSPAPPKSQLASLALLRKHILQSNPPTNPVLKSLIIEEDDTTAGNSSPTEVAVKALNDN
LTSLGSGSDVRPSKSSAEVENSNVGVDNGITYEYLSQLGGDADVQTNGPNELEDMVEDIQQKAVDKSLNGNLSSLGSGSIVCPSKTSAEVENSNIGVDDG
VIDENSSLRGGDVDIQTNRRNELEDMPEDTAMEYLNPRDQFEQLSAAFVEDHAMDSCPETQDRDLEQTKANTPKHNNERVEKPPVVSTNKQTKEKSCTAK
GRKYRSLSRRQSLAASGTSWETGVRRSTRIRSRPLEYWKGERFLYGRIHGSLATVIGIKYESPQNDKGKPALKVKSFVSDEYKNLVELAALH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15660 CENP-C CENP-C HOMOLOGUE, centromere p... Potri.001G178200
[exp]
0 1
AT5G46070 Guanylate-binding family prote... Potri.004G049400
[exp]
4.89 0.7087
AT4G27220 NB-ARC domain-containing disea... Potri.019G002800
[exp]
5.47 0.6756
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.012G080200
[exp]
12.00 0.6785
AT1G05830 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithor... Potri.018G023000
[exp]
18.65 0.6825
AT3G27870 ATPase E1-E2 type family prote... Potri.001G349100
[exp]
30.85 0.6397
AT2G34660 EST4, ATMRP2, A... Arabidopsis thaliana ATP-bindi... Potri.011G091200
[exp]
32.00 0.6699 MRP1.1
AT2G31820 Ankyrin repeat family protein ... Potri.007G145200
[exp]
36.33 0.6468
AT4G27220 NB-ARC domain-containing disea... Potri.001G425500
[exp]
42.21 0.6592
AT3G14470 NB-ARC domain-containing disea... Potri.014G002900
[exp]
45.38 0.6623
AT4G27190 NB-ARC domain-containing disea... Potri.001G432680
[exp]
46.46 0.6512

Potri.001G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.