Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 307 / 6e-103 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 149 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 129 / 8e-34 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 87 / 6e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 76 / 4e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 74 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 64 / 5e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 63 / 6e-11 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39580 63 / 9e-11 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G178300 [exp] 360 / 1e-123 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 207 / 2e-64 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 196 / 8e-60 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 190 / 2e-57 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 159 / 2e-44 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 148 / 1e-40 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 89 / 2e-19 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 88 / 3e-19 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 84 / 1e-17 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016214 [exp] 208 / 3e-64 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 208 / 4e-64 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 187 / 2e-56 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 177 / 8e-53 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 88 / 4e-19 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10023608 [exp] 80 / 3e-16 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 77 / 4e-15 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 76 / 7e-15 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 70 / 5e-13 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10000704 [exp] 69 / 2e-12 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.001G178500.1 pacid=42787901 polypeptide=Potri.001G178500.1.p locus=Potri.001G178500 ID=Potri.001G178500.1.v4.1 annot-version=v4.1 ATGGCACAGCTAATCCCAAGCCTCCCTAATGACATTGCTACCGAATGCTTGATACGCTTGCCATTTCAACACTTTCCTGCAGCGACATTGGCATGCGAAG GCTGGAAACTTGAGATAGAGTCACCAGAGTTTTTTCAAAGTCGAAAGGTTGCTGGTTATAGCCAGCCCACCATTGTTATGGCACTAGCAAGGGTTGGTGA AGAAACAGGAGGTAGCAGTCAGAAAAATCTAAGAAGCCCAACAACTTATAGGCTTGCATTTTGTGACCTCAAAACGGGAACATGGGGTGAGTTGCAGCCA ATTCCAGAATTCTCAAAAGGTCTGCCGATGTTTTGCCGATTGGCCGTGGCTGGTTTAAATTTGGTGGTGATTGGCGGGTGGGATCCAGAAACTTGCAGGG TATCCAACGCCGTGTTTATATACAGTTTCGTGTCAGCCACGTGGCGTCGTGGGGCTGACATACCTGGTGTTAAGAGGTCACTTTTTGGGTGTGCATCGGA TATTAATGGAAACAAGGTGTATGTTGCGGGGGGACATGAGGAGGAAAAGAATGCATTGACTTCTGTTTTGGGATATGATGTGGCAAAGGATGATTGGATT AAATTGCCCGACATGGCAAGGGAGCGTGACGAGTGCAATGCTGTGTTCCATTCTGGCAAAATCCATGTCTTTGGCGGGTACTCCACGGAAGCACAAGGTG TTTTCGATGCAAGTTCTGAGGCCTTTGATCTTGGCGAGTGGCGGTGGGTTCAAATGCAAGAGAACTTTTTAGGAACAAATATGAGTGCAAGAACTTGCGT GGCTGATGGTAATGGAAGGTTTTGCATATGTCAAGGTAGTGAGGTGATGGTTGCATACGAGGAGGCCGAGTGGCGGAGAGTTGCTGAGTTGCCGGTTGAT ATGGGCGTCCCTGCTTGTGTGATGATGGGCCAGAATAAATTACTTGTGATTGGGGCTGGAAAGTCTGATGATCCCCATATGTTCTTTGAGTTGGATTTGG AGAGATACACATGGACAATGCTGGAGGCTCCAAAACAGCACTCGGGCCATGTTCAATCAATTTGTTTTCTGGAGATCTAG
AA sequence Show only first row Show all	>Potri.001G178500.1 pacid=42787901 polypeptide=Potri.001G178500.1.p locus=Potri.001G178500 ID=Potri.001G178500.1.v4.1 annot-version=v4.1 MAQLIPSLPNDIATECLIRLPFQHFPAATLACEGWKLEIESPEFFQSRKVAGYSQPTIVMALARVGEETGGSSQKNLRSPTTYRLAFCDLKTGTWGELQP IPEFSKGLPMFCRLAVAGLNLVVIGGWDPETCRVSNAVFIYSFVSATWRRGADIPGVKRSLFGCASDINGNKVYVAGGHEEEKNALTSVLGYDVAKDDWI KLPDMARERDECNAVFHSGKIHVFGGYSTEAQGVFDASSEAFDLGEWRWVQMQENFLGTNMSARTCVADGNGRFCICQGSEVMVAYEEAEWRRVAELPVD MGVPACVMMGQNKLLVIGAGKSDDPHMFFELDLERYTWTMLEAPKQHSGHVQSICFLEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	2.64	0.9077
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	5.74	0.8617
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Potri.001G116800 [exp]	6.63	0.8220	Pt-PHR1.2
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	7.21	0.8196
AT2G35910			RING/U-box superfamily protein...		Potri.016G067900 [exp]	9.16	0.8501
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	9.79	0.8541
AT3G11590			unknown protein		Potri.016G074300 [exp]	10.86	0.8630
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	11.00	0.8320	AUL1.3
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	12.24	0.8154
AT2G35910			RING/U-box superfamily protein...		Potri.006G201500 [exp]	12.96	0.8223

Compare expression of checked genes

Potri.001G178500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.