Plant FIBer expression Database

Potri.001G178800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50170 253 / 8e-86 ATSIRB sirohydrochlorin ferrochelatase B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022245
[exp]
274 / 8e-95 AT1G50170 265 / 3e-91 sirohydrochlorin ferrochelatase B (.1)
Lus10008769
[exp]
271 / 8e-91 AT1G50170 261 / 8e-87 sirohydrochlorin ferrochelatase B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0043 Chelatase PF01903 CbiX CbiX
Representative CDS sequence
>Potri.001G178800.4 pacid=42789318 polypeptide=Potri.001G178800.4.p locus=Potri.001G178800 ID=Potri.001G178800.4.v4.1 annot-version=v4.1
ATGGGGTTAGAGTCGTTTTCTATCTCATCAGTCTCTCCTCTCATTCTGGCTAAAATTAATTGTTGTTCAGGAAGGGAAACAACTGCGAGAAGAAATCCCA
GATGGGCGTTGACTCCCAAATCCTCGAATTTACAAAACGTAAAGTATTCATCAAGAAGAATCTTGTGTTTGAACAGTGGGGATGGTGGAATTATGAAGAC
GAACCCTCGAGGGAATGGGGTCTTTGTGGGCGACAAAGACGGTGTCATCATTGTTGACCATGGCTCACGTCGTAAAGAATCAAATCTCATGCTCAATGAG
TTTGTGGCCATGTTTAGAGATAAAACTGGGTACCTAATTGTGGAGCCTGCTCATATGGAGCTGGCTGAGCCCTCGATAAGAGATGCTTTTGGTTTGTGTG
TTCAACAAGGGGCGAATCGTGTGATCGTGAGCCCATTCTTTCTCTTTCCAGGACGACATTGGCACCGGGATATTCCTTCATTGACTGATGAAGCTGCTAA
GGAGCATCCTGGTGTCTCATATCTCATAACTGCACCTCTTGGCTTGCATGAGCTACTTGTGGATGTTATGAATGATAGGATAAACTACTGTTTAAGCCAT
ATAGCAGGAGATGCAAATGAATGTGCAGTTTGCGTTGGAACAAGCAAATGCAAGCTCTATTAG
AA sequence
>Potri.001G178800.4 pacid=42789318 polypeptide=Potri.001G178800.4.p locus=Potri.001G178800 ID=Potri.001G178800.4.v4.1 annot-version=v4.1
MGLESFSISSVSPLILAKINCCSGRETTARRNPRWALTPKSSNLQNVKYSSRRILCLNSGDGGIMKTNPRGNGVFVGDKDGVIIVDHGSRRKESNLMLNE
FVAMFRDKTGYLIVEPAHMELAEPSIRDAFGLCVQQGANRVIVSPFFLFPGRHWHRDIPSLTDEAAKEHPGVSYLITAPLGLHELLVDVMNDRINYCLSH
IAGDANECAVCVGTSKCKLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50170 ATSIRB sirohydrochlorin ferrochelatas... Potri.001G178800
[exp]
0 1
AT4G02990 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitoch... Potri.014G137400
[exp]
4.24 0.8858
Potri.006G127050
[exp]
13.30 0.8259
AT3G10350 P-loop containing nucleoside t... Potri.008G037100
[exp]
14.45 0.8742
AT3G09085 Protein of unknown function (D... Potri.006G096200
[exp]
21.35 0.8729
AT1G62390 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1,... Potri.004G002900
[exp]
28.49 0.8601
AT5G60750 CAAX amino terminal protease f... Potri.001G097500
[exp]
28.77 0.8305
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.012G105900
[exp]
29.08 0.8400 CLPC.1
AT5G67290 FAD-dependent oxidoreductase f... Potri.005G060500
[exp]
32.03 0.8687
AT2G43630 unknown protein Potri.006G123800
[exp]
47.05 0.8430
AT2G17033 pentatricopeptide (PPR) repeat... Potri.009G139300
[exp]
48.37 0.8761

Potri.001G178800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.