Plant FIBer expression Database

Potri.001G178900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80000 273 / 2e-82 CASC3/Barentsz eIF4AIII binding (.1.2)
AT1G15280 184 / 6e-50 CASC3/Barentsz eIF4AIII binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G056500
[exp]
823 / 0 AT1G15280 152 / 4e-39 CASC3/Barentsz eIF4AIII binding (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011468
[exp]
504 / 1e-170 AT1G80000 281 / 9e-86 CASC3/Barentsz eIF4AIII binding (.1.2)
Lus10037523
[exp]
488 / 2e-157 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09405 Btz CASC3/Barentsz eIF4AIII binding
Representative CDS sequence
>Potri.001G178900.3 pacid=42791183 polypeptide=Potri.001G178900.3.p locus=Potri.001G178900 ID=Potri.001G178900.3.v4.1 annot-version=v4.1
ATGGCCAGGGTTGGTGAAGCGGAGATTGAATATGAGAGTGATCCTGAGGAAGAGAAGCGGTTGCTTGGAAGGAGAAGGAGAGAAGCTGCGAGTGACGACG
AGGAGGGTGAAGGAGAAGAGAAGCCCATAATTGATCGGAGGTCTCCAATTCACTCTGATGAATCTGACGACCAGGTTGGGGCTGCAGACTATGATGACGA
CGAAGAAGAAGAAGAAGACGCATTAAATGGAGAGGAAGATGGAGATGACGATGAAGAGGTTTATGATGATGAAGTGGAAGAAGAAGAGGTTTATGAGGAA
GAGGAGGGGGAAAAAGGAAATGAAAAGGGAGTAGGAGGCAACGGCAATGTTGGTGTTGAGGTTAGGGAAAAGGAGATTGAGGGGAGGAAGGTGGAGGAGA
TGGGAGAGGAGAAAGTGGAGGAAGGGGAAGAGGGGAAGAAGGAGAACGAGCCATTTGCTGTGCCTACTGCTGGGGCATTTTACATGCATGATGATAGGTT
TAGGGACAGTGCTGGTGGTCGGCACAGGCGAACCTTAGGTCGAAGGAAGTTGTGGGAGTCCAAAGACAATAAGAAATGGGGGCATGACAAGTTTGAAGAG
ATGACTTTGCAGGAAAGGCATTATGAACAGGGAAGAAGGAATGCTAAAGGTAATTTTCATGCCCGTGGTGGTAAAAATCGAGGTCCAGAACAAGGATATG
CCAGACGGAACAGGTCGCAATCATTTAGTGATGGTAACAATCAAAACCAGGCACCAAAAGCTGTGAGAGGTAGAGGACCCAGAAAGGGTGAATCTACTTT
CAAGAGCCGCAGAGAGACACCTCCAGTGCAAAGCAAACAGCCTGGGAAGCCCCTTGAAAAACATTCGCATGGCAGTTCAGGGAGAGTTTTGATATCAGCA
TCAAATACAGAATCTGATCAAGTGCCCACTGCTCGAAAAAACTCAAACTTGAGTTCTGCTTCTCCTCCTTTTTATCCTTCTGGATCTTCAAGTAAAGACA
TCACCTTGGGTCAGAAAAGGGATGTACACGGTGCAAGCACAAGCAAGAATCATCGCACTCCTGTTATAGATGAGAATTTTCCTATGCAGCAAACCAGTGC
ATTGGTGAGGGGGAAGAATATAGCTGACTCTGTTGCAATTGACAAGCTTTATATTGATGATTCCATCACTCCAGCAGGGAAGCCTTTGAACAATATGCAA
ACGCCACCATCTGTATCTTCTGTGGTCAGCACTATCCAATCTTTGCAATCCAGGGCGCAAGGGAGGGGTGTAGCTATGTCAAGCCAGAGGAGTTATCAGG
GGAGTCCACAGCACAACCTAACCAACAGAACCTCTCCCACCGCACCGCTTCACTCTCGTCAGCGAAGTCCTGCTCAAAACCGCATTCAACCAGCTCCTGC
TCAAAACCGCATTCAACCAGCTCCTGCTCAGCCGTTAGTCCAACATCCTGGTAGTGGCTCTCAAGCCTCTTCTCCACCAAAAACTGCTTTGTCACTAAAT
TCTTATGAAGCTGGTGAAGCAGAGACTGCTGTGGAATCAAGTAAATCCAGAACTGCATTGGTTGGAAAGGGAAAAGGCATTATTCAAGGAAATGGAAGGG
GATCTTTTCTTTATGGTGGGGCAGAGGTTGTGGGAGCCACAAGGAATATGGGTGTTGGGCATGGTGATCAGAACCTCCCCGGAACACCAACGTTTTTGCC
AGTTATGCAATTTGGAAGTCAGCATCCTGGTGGTATTGGAGTTCCTGCGGTTGGCATGGCATTTCCTGGATATGTTGCTCAGCCTCAACTTGGTTTAGGG
AATTCTGAAATGACATGGTTACCAGTTCTGACTGGTGCTGCAGGAGCTTTAGGGGCTACTTATTGTTCGCCTTATCTTACAGTTGATGGTGCTTATCATG
GTCGTCCATCCAGGCAAGCATCTTGCTTGGGTTCTTCAAGTGAAGAAAGTAGTTCCAATGTACCCGATAATGAATGGAAGCCTACTCAGAGACCTGAACT
TGCAAGTGATGAATTTGGACAGCGACAAAAGCCTCGCAGATACTCGGAGATGGATTTTAAGCAGCCAAGTACAAGCACTTAG
AA sequence
>Potri.001G178900.3 pacid=42791183 polypeptide=Potri.001G178900.3.p locus=Potri.001G178900 ID=Potri.001G178900.3.v4.1 annot-version=v4.1
MARVGEAEIEYESDPEEEKRLLGRRRREAASDDEEGEGEEKPIIDRRSPIHSDESDDQVGAADYDDDEEEEEDALNGEEDGDDDEEVYDDEVEEEEVYEE
EEGEKGNEKGVGGNGNVGVEVREKEIEGRKVEEMGEEKVEEGEEGKKENEPFAVPTAGAFYMHDDRFRDSAGGRHRRTLGRRKLWESKDNKKWGHDKFEE
MTLQERHYEQGRRNAKGNFHARGGKNRGPEQGYARRNRSQSFSDGNNQNQAPKAVRGRGPRKGESTFKSRRETPPVQSKQPGKPLEKHSHGSSGRVLISA
SNTESDQVPTARKNSNLSSASPPFYPSGSSSKDITLGQKRDVHGASTSKNHRTPVIDENFPMQQTSALVRGKNIADSVAIDKLYIDDSITPAGKPLNNMQ
TPPSVSSVVSTIQSLQSRAQGRGVAMSSQRSYQGSPQHNLTNRTSPTAPLHSRQRSPAQNRIQPAPAQNRIQPAPAQPLVQHPGSGSQASSPPKTALSLN
SYEAGEAETAVESSKSRTALVGKGKGIIQGNGRGSFLYGGAEVVGATRNMGVGHGDQNLPGTPTFLPVMQFGSQHPGGIGVPAVGMAFPGYVAQPQLGLG
NSEMTWLPVLTGAAGALGATYCSPYLTVDGAYHGRPSRQASCLGSSSEESSSNVPDNEWKPTQRPELASDEFGQRQKPRRYSEMDFKQPSTST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80000 CASC3/Barentsz eIF4AIII bindin... Potri.001G178900
[exp]
0 1
AT4G02720 unknown protein Potri.002G051500
[exp]
1.00 0.9443
AT1G14920 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMON... Potri.017G149500
[exp]
2.00 0.9195
AT1G17070 GC-rich sequence DNA-binding f... Potri.019G043200
[exp]
4.47 0.9166
AT5G49840 ATP-dependent Clp protease (.1... Potri.004G229400
[exp]
6.00 0.9156
AT4G27220 NB-ARC domain-containing disea... Potri.011G124000
[exp]
6.48 0.8817
AT4G00980 zinc knuckle (CCHC-type) famil... Potri.002G171900
[exp]
7.14 0.8855
AT1G08620 PKDM7D Transcription factor jumonji (... Potri.019G018700
[exp]
7.41 0.8928
AT5G41150 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, ... Potri.001G150400
[exp]
8.48 0.8961
AT2G35050 Protein kinase superfamily pro... Potri.001G123500
[exp]
8.83 0.8793
AT3G42170 BED zinc finger ;hAT family di... Potri.011G125951
[exp]
8.94 0.8878

Potri.001G178900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.