Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15940 795 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G52420 734 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 122 / 2e-29 UDP-Glycosyltransferase superfamily protein (.1) AT1G75420 115 / 3e-27 UDP-Glycosyltransferase superfamily protein (.1) AT4G02280 50 / 6e-06 ATSUS3, SUS3 sucrose synthase 3 (.1) AT1G78800 49 / 1e-05 UDP-Glycosyltransferase superfamily protein (.1) AT5G01220 47 / 5e-05 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT3G43190 46 / 8e-05 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118800 [exp] 118 / 7e-28 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G031300 [exp] 116 / 3e-27 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G112600 [exp] 53 / 4e-07 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.002G202300 [exp] 54 / 5e-07 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G097600 [exp] 50 / 6e-06 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.017G139100 [exp] 49 / 2e-05 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 48 / 2e-05 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.006G136700 [exp] 45 / 0.0002 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037523 [exp] 786 / 0 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 624 / 0 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024281 [exp] 109 / 4e-25 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10041786 [exp] 108 / 2e-24 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 108 / 3e-24 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002499 [exp] 55 / 2e-07 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 54 / 3e-07 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10001468 [exp] 52 / 1e-06 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10013417 [exp] 50 / 5e-06 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10037008 [exp] 49 / 8e-06 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF16994 [poplar] [flax] Glyco_trans_4_5 Glycosyl-transferase family 4
Representative CDS sequence Show only first row Show all	>Potri.001G179000.7 pacid=42790736 polypeptide=Potri.001G179000.7.p locus=Potri.001G179000 ID=Potri.001G179000.7.v4.1 annot-version=v4.1 ATGGAGGAAGGCAAGAGTAGAGGAGATTTACATGTTAATGTACTTAAGCAAACACCTTCAAGACAAGGTGGAAGTTTCAAGTCCACCACATTGTCAGGGA GGTCAACACCTCGGAACTCTCCTACTCATCGGTTACTACATTCCAGTCGAACTCCACGAAGAGAGGGTAGAGGTAGTGGAGGGATACAGTGGTTTCGAAG CAATCGATTAATATACTGGTTACTTCTCATTACTCTATGGACTTACCTTGGGTTTTACGTCCAGTCCAGATGGGCTCATGGTGATAACAAGGATGAATTT CTGGGGTTTGGAGGTAAATCCAGCAATGGACTTTTAGATGCTGAACAGCATACACGACGAGATTTGCTTGCCAATGATAGTTTGGTAGTTGTAAATAATG GGACCAATAAAATTCAGGTGAGAAATGCTAAAAAGATAGATGTTGTTTTGGCCAAGAAGGGGAATGGAGTTTCATCTAATCGAAGAGCAACTCCTAAGAA GAAGAAGAGCAAGAGAGGAGGACGCAGGTCACGTGCCAAAGCACATGATAAACAAAAGGCAACAGTAGTGGTTGAAAGCGATGATGTAGAGGTTGCAGAA CCTGATGTTCCTAAAAATAATGCTTCTTATGGTTTACTTGTTGGCCCATTTGGGCCAATAGAGGATAGAATTTTGGAATGGAGCCCTGAGAAACGATCAG GAACATGTGATAGGAAGGGGGCCTTTGCACGTCTTGTATGGTCTAGGAAATTTGTGTTAATATTCCATGAACTCTCGATGACTGGAGCTCCACTTTCAAT GTTGGAGTTGGCAACAGAGTTTTTGAGCTGTGGAGCCACAGTTTCTGCTGTAGTTCTCAGCAAGAAGGGTGGCTTGATGCCAGAGCTTGCTAGGAGAAGG ATCAAAGTGCTTGAAGACAGAGCAGATCTCAGCTTCAAAACAGCCATGAAAGCAGATCTTGTCATTGCAGGATCAGCTGTCTGTACCTCATGGATAGATC AATACATTGCCCGTTTTCCAGCTGGAGGTAGTCAAGTTGTTTGGTGGATTATGGAAAATCGACGAGAATACTTTGATAGGTCAAAAATTATCCTTAATCG AGTGAAAATGCTGGTCTTTCTCTCTGAAAGTCAGATGAAACAATGGCAAACTTGGTGTGAGGAAGAAAATATTAGGCTGAGATCTCCACCAGCAGTGGTT CAACTTTCTGTTAATGATGAGCTAGCTTTTGTAGCCGGCATTGCTTGTTCACTAAATACTCCAACTTCTAGCTCTGAAAAGATGTTGGAGAAAAGACAGT TGCTACGGGAATCTGTTAGAAAAGAGATGGGATTGACAGATAATGATATGCTTGTGATGTCTCTCAGCAGCATAAATGCTGGTAAGGGTCAGCTCTTGCT TCTTGAATCAGCAAACCTGGTGATTGAACCAGATCCTTCGCCTAAAATAACAAATTCAGTGGATAAGGGTAACCAATCTACCTTGGCTGCGAAGCATCAT TTAAGAGCTCTGTTGGCGAAGCCAGAAAATCTTGTCAGATTTTCAAATGAATTTAGCCGCTACAGTGAGTCTTCTACCAGATTGGCTGAACCTAATAAGA CGAATTCACAAGTTACCAGTGTCTCTAACTCCATTGATTACAACGTTGCCGGGAACCTTGACAGAAGTCACAGAAAAAGGAAGTTGTTGGCTGACAGTGA AGGAACACATGAACAGGCTCTTAAAGTTCTTATTGGTTCTGTTGGATCTAAAAGCAATAAGGTGCCTTATGTCAAAGAGATTCTGAGGTTCATATCCCAA CATTCAAATTTGTCGAAGTCAGTGTTATGGACTTCAGCAACTACACGTGTTGCCTCGCTTTACTCTGCGGCAGATGTTTATATTACAAACTCCCAGGGCC TGGGAGAGACATTTGGAAGAGTTACCATAGAAGCCATGGCGTTTGGTCTTCCGGTCCTTGGAACAGATGCAGGAGGCACACAAGAAATTGTTGAGCACAA CATAACAGGGCTTCTTCATCCCGTGGGACGTCCAGGATCTCGTGTTCTTGCTCAAAATATCGAACTCTTACTTAAAAATCCATCTGTGAGGAAGCAAATG GGGATCAAAGGGAGGAAAAAAGTGGAGAAAATGTACTTGAAGCGGCACATGTATAAAAAAATCTGGGAGGTTCTTTACAAGTGCATGAGAGTCAAATGA
AA sequence Show only first row Show all	>Potri.001G179000.7 pacid=42790736 polypeptide=Potri.001G179000.7.p locus=Potri.001G179000 ID=Potri.001G179000.7.v4.1 annot-version=v4.1 MEEGKSRGDLHVNVLKQTPSRQGGSFKSTTLSGRSTPRNSPTHRLLHSSRTPRREGRGSGGIQWFRSNRLIYWLLLITLWTYLGFYVQSRWAHGDNKDEF LGFGGKSSNGLLDAEQHTRRDLLANDSLVVVNNGTNKIQVRNAKKIDVVLAKKGNGVSSNRRATPKKKKSKRGGRRSRAKAHDKQKATVVVESDDVEVAE PDVPKNNASYGLLVGPFGPIEDRILEWSPEKRSGTCDRKGAFARLVWSRKFVLIFHELSMTGAPLSMLELATEFLSCGATVSAVVLSKKGGLMPELARRR IKVLEDRADLSFKTAMKADLVIAGSAVCTSWIDQYIARFPAGGSQVVWWIMENRREYFDRSKIILNRVKMLVFLSESQMKQWQTWCEEENIRLRSPPAVV QLSVNDELAFVAGIACSLNTPTSSSEKMLEKRQLLRESVRKEMGLTDNDMLVMSLSSINAGKGQLLLLESANLVIEPDPSPKITNSVDKGNQSTLAAKHH LRALLAKPENLVRFSNEFSRYSESSTRLAEPNKTNSQVTSVSNSIDYNVAGNLDRSHRKRKLLADSEGTHEQALKVLIGSVGSKSNKVPYVKEILRFISQ HSNLSKSVLWTSATTRVASLYSAADVYITNSQGLGETFGRVTIEAMAFGLPVLGTDAGGTQEIVEHNITGLLHPVGRPGSRVLAQNIELLLKNPSVRKQM GIKGRKKVEKMYLKRHMYKKIWEVLYKCMRVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15940			UDP-Glycosyltransferase superf...		Potri.001G179000 [exp]	0	1
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	4.12	0.8839
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	5.65	0.8548
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	7.61	0.7964
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	12.48	0.8004
AT3G15430			Regulator of chromosome conden...		Potri.011G121900 [exp]	16.43	0.8214
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.007G123000 [exp]	16.79	0.7671
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.006G090300 [exp]	17.43	0.7908
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	21.21	0.8434
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	22.09	0.8417
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.013G135200 [exp]	22.97	0.8334

Compare expression of checked genes

Potri.001G179000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.