Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52380 326 / 3e-107 NUP50 (Nucleoporin 50 kDa) protein (.1) AT3G15970 301 / 4e-97 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056400 [exp] 667 / 0 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.006G102400 [exp] 52 / 3e-07 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.009G060901 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037931 [exp] 369 / 1e-123 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1) Lus10038663 [exp] 129 / 5e-34 AT1G52380 100 / 1e-24 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00638 [poplar] [flax] Ran_BP1 RanBP1 domain CL0266 [poplar] [flax] PF08911 [poplar] [flax] NUP50 NUP50 (Nucleoporin 50 kDa)
Representative CDS sequence Show only first row Show all	>Potri.001G179100.3 pacid=42787898 polypeptide=Potri.001G179100.3.p locus=Potri.001G179100 ID=Potri.001G179100.3.v4.1 annot-version=v4.1 ATGGGGGATGCAGAAAATTCCCTTCCTCCTTCGAAGAAGAGGGCTGCTGGAAGGGAGATCTCCAGAGATAACCCTGGTCTTGATGATGATGACTCTGTTG AGCAAGAAACTGGGACTTTCAAGAGAGCCAGTGAAGAGGTACTGGCAGGAAGAAGAATTGTGAAAGTTCGTCGCAACCAAACCACATCAACTCCATCATC CAATCCATTTGCTAGCATTCGCCTAGTTCCTCCTACTGAGCCAATTGCGGGCACTGCTGTAGCCACAACTGAAGTAGTTAGTACTAGGCAGCAAATTTCA GAAGAAGGGAAAAGTGATGTGTGCGAGGATGTTGAAAAGGGTCAAGGTGAGAAGACTGAGCAGTCAGAGAGTGAGATTGATAAGCCAGTGGCTGAAAGTG CTGAAGATAAGAAGAATGCTGTAGATAAGGAGAAAAGTAAGGAGCCAGAAGGAAAGACTGACGAGCCAGTGGCTGAGACTGCTATGGACAAGGAGAGTGT GGAAGATAAGGGAAATACCAAAGATGAGCCAGTGACTGAAATTGCTACAGATAAGGAGAAGGGTGAGGAATCAGAGGGCAAGGTTGATGAGCCAGTGGCT GGGACTGCTATAGACAAGGAGAGTGCGGAAGATAAGGGAAATAACAGTACAGTCAATGAGGCAACTGAATTGAAGGTGGATAATGAGAAACCATTGGAAG ATGAGACTGAGAAAGAAAAGGCTACAGGAGATGATGATGCAGAAAATCAAGATAAGAAGGATAATGGTAGTGAAAATGTTGATCCAAGTTCTGAAGGTGC CCCTTTGAATTCATTCCAACAGCTTTCAAGTAGCCAGAATGCTTTCACAGGGCTTGCTGGAACTGGGTTTTCCACTACTTCGTTCACTTTTGGTTCATTT CCAAAGGATGGCTCTGTAATGGGTGGTGGTTCTGGTTCTCTGTTTGGGCAGAAAAATGAACAACCTTCTTTTGGATTCGGTCTCTCTAACAATGGAAGCT CTTCACTGGCGTCTATTGTCTCAAAGACCGAGGGAACTGGTTTTCCATCTATGCAGGAGGTTCCAGTTGAGACAGGGGAAGAGAATGAGAGAGTGGTGTT CTCTGCTGATTCAGTGGTGTTTGAATTTCTTGATGGTGGCTGGAAGGAGCGTGGAAAGGGAGAACTCAGGGTCAATGTATCTACCACTGGAGCTGAAAGA GCCAGACTTCTAATGAGAGCTAGGGGTAATTTCAGGTTAATTCTGAATGCAAACATTTATCCTGATATGAAGCTTACAAATATGGACAAGCGAGGTATCA CTTTTGCCTGCATGAACAGTATTGGTGAAGGTAAGGACAGCCTTTCCACTTTCGCACTGAAGTTCAAAGACAGTTCCATTGTAGAAGAGTTTCGCACAGC TGTCACTGCACATAGAGATAAAGCACCTGTAGCTCTGAAGACTCCAGAGAATTCACCAAAGGCTTCTGATGAGTGA
AA sequence Show only first row Show all	>Potri.001G179100.3 pacid=42787898 polypeptide=Potri.001G179100.3.p locus=Potri.001G179100 ID=Potri.001G179100.3.v4.1 annot-version=v4.1 MGDAENSLPPSKKRAAGREISRDNPGLDDDDSVEQETGTFKRASEEVLAGRRIVKVRRNQTTSTPSSNPFASIRLVPPTEPIAGTAVATTEVVSTRQQIS EEGKSDVCEDVEKGQGEKTEQSESEIDKPVAESAEDKKNAVDKEKSKEPEGKTDEPVAETAMDKESVEDKGNTKDEPVTEIATDKEKGEESEGKVDEPVA GTAIDKESAEDKGNNSTVNEATELKVDNEKPLEDETEKEKATGDDDAENQDKKDNGSENVDPSSEGAPLNSFQQLSSSQNAFTGLAGTGFSTTSFTFGSF PKDGSVMGGGSGSLFGQKNEQPSFGFGLSNNGSSSLASIVSKTEGTGFPSMQEVPVETGEENERVVFSADSVVFEFLDGGWKERGKGELRVNVSTTGAER ARLLMRARGNFRLILNANIYPDMKLTNMDKRGITFACMNSIGEGKDSLSTFALKFKDSSIVEEFRTAVTAHRDKAPVALKTPENSPKASDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	0	1
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	3.00	0.9181
AT2G44200			CBF1-interacting co-repressor ...		Potri.016G000501 [exp]	4.00	0.8980
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	4.69	0.9155
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	5.19	0.9145
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	5.47	0.9053
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	5.91	0.8987
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	6.00	0.8935
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	6.92	0.8911
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	7.74	0.9140
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	10.24	0.9081

Compare expression of checked genes

Potri.001G179100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.