Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52360 1621 / 0 Coatomer, beta' subunit (.1.2) AT3G15980 1602 / 0 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 1598 / 0 structural molecules (.1.2.3.4.5) AT2G21390 275 / 1e-77 Coatomer, alpha subunit (.1) AT1G62020 271 / 6e-76 Coatomer, alpha subunit (.1) AT3G49660 107 / 4e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 98 / 9e-21 TAF5 TBP-associated factor 5 (.1) AT1G11160 95 / 2e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 89 / 6e-19 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 89 / 6e-19 RACK1B_AT receptor for activated C kinase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056300 [exp] 1737 / 0 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 461 / 3e-155 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 262 / 4e-73 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 261 / 9e-73 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 101 / 5e-23 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 97 / 2e-21 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 97 / 5e-21 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 99 / 7e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 98 / 1e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011467 [exp] 1512 / 0 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10033092 [exp] 1472 / 0 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037524 [exp] 1088 / 0 AT1G52360 1077 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 512 / 8e-176 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 399 / 2e-132 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 393 / 2e-129 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037538 [exp] 263 / 1e-75 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 268 / 8e-75 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 266 / 3e-74 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 266 / 3e-74 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] Beta_propeller PF04053 [poplar] [flax] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Potri.001G179200.9 pacid=42792325 polypeptide=Potri.001G179200.9.p locus=Potri.001G179200 ID=Potri.001G179200.9.v4.1 annot-version=v4.1 ATGCCTCTCAGACTCGAAATCAAGAGGAAACTTGCTCAAAGATCAGAGAGAGTAAAGTCAGTCGATCTACATCCAACTGAACCATGGATTTTAGTGAGTT TGTATTCAGGGACTGTGTGTATCTGGAACTACCAGTCACAGACCATGGCAAAGTCTTTTGAGGTCACTGAATTACCAGTTAGGTCAGCCAAGTTTATAGC ACGAAAGCAGTGGGTTGTTGCTGGGGCCGATGACATGTATATTCGTGTGTACAACTACAACACAATGGATAAGATAAAAGTTTTAGAGGCGCATACAGAT TACATTAGATGTGTGGCTGTCCATCCTACCCTTCCATATGTGTTGTCATCATCTGATGACATGCTTATAAAACTTTGGGATTGGGAGAAGGGTTGGGCCT GTACTCAGATATTTGAGGGGCATTCTCATTATGTGATGCAGGTTACTTTTAATCCTAAAGACACCAACACTTTCGCAAGCGCATCCCTTGATCGCACCAT AAAGATATGGAATCTTGGCTCTCCCGACCCAAATTTCACTCTGGATGCCCATCAGAAAGGAGTAAATTGTGTCGATTACTTTACTGGTGGAGATAAACCT TATCTAATAACTGGTTCTGATGATCACACTGCGAAGGTATGGGACTATCAAACTAAAAGTTGCGTCCAGACTTTGGACGGCCATACACACAATGTCTCTG CTGTATGTTTCCATCCCGAACTTCCAATAATAATTACAGGTTCTGAGGATGGGACTGTTCGTATATGGCATTCAACAACTTACAGGCTTGAGAACACCTT GAATTATGGCCTAGAAAGAGTTTGGGCTGTTGGATACATGAAAGGTTCACGCCGTATTGTGATTGGGTATGATGAAGGAACCATTATGGTCAAGATCGGC CGAGAAGAACCTGTAGCTAGCATGGACAATAGTGGAAAGATTATATGGGCCAAGCACAATGAAATTCAAACTGTGAACATTAAGAGTGTGGGGGCAGATT TTGAGGTCACTGATGGTGAAAGATTGCCTTTGGCTGTTAAGGAGTTGGGAACATGTGATCTTTACCCCCAAATCTTAAAGCACAATCCCAATGGGAGGTT TGTTGTTGTCTGCGGAGATGGTGAGTACATCATATATACAGCTTTAGCATGGAGAAACAGATCATTTGGTTCTGCACTTGAATTCGTTTGGTCTGCTGAT GGTGAATATGCTGTTAGAGAAAGTACATCAAAGATAAAGATTTTCAGTAAAAATTTCCAGGAAAAGAAGAGCATCCGGCCAACCTTTTCAGCTGAGCGTA TTCACGGAGGAACCCTGTTGGCTATGTGCTCAAATGATTTCATTTGTTTCTATGACTGGGCTGAATGCAGGTTGATTAGGAGAATTGATGTTACTGTGAA GAATCTCTTTTGGGCTGACAGCGGAGATTTAGTGGCTATTGCAAGTGATACGTCATTCTACATCCTCAAATACAATCGTGAGATAGTTTCATCTTATTTA GATAATGGAAAACCTGTAGATGAACAAGGTATTGAGGATGCATTTGAGCTTCTTCATGAAACCAATGAACGTGTCAGAACTGGCTTATGGGTTGGGGATT GTTTTATATATAACAACTCCTCCTGGAGGCTTAATTATTGTGTTGGAGGCGAGGTAACCACTATGTATCATCTGGACCGTCCCATGTACTTACTGGGGTA CCTTGCTGGTCAAAGTCGGGTGTATTTGATAGACAAAGAATTCAATGTCATGGGGTACACTTTACTCCTTAGCTTAATTGAGTACAAGACTCTGGTGATG CGGGGAGATCTGGAGAGGGCCAGTGAAGTTTTACCTTCAATTCCTAAAGAACACCATAATAGTGTGGCTCGTTTCTTGGAATCACGAGGCATGATAGAGG ATGCTCTGGAAGTAGCTACTGACCCTGATTACAGATTTGAGCTAGCTATTCAGCTTGGTAGATTAGAGGCTGCGAAGGAAATTGCCAGTGAAGTGCAGAG TGAGTCAAAGTGGAAACAGTTGGGAGAGTTGGCCATGTCCAGTGGAAAGTTGGAAATGGCTGAGGAATGCATGAGGCATGCAACAGACTTGAGTGGTTTG CTGCTACTGTATTCTTCCTTAGGAGATGCTGAAGGGATATCAAAGCTTGGATCCTTGGCAAAAGAACAGGGGAAGATAAATGTTGCATTCCTTTGTTTGT TCATGTTGGGCAAAGTTGAAGACTGCCTCCAGTTGTTGGTGGAAAGCAATCGGATACCTGAGGCTGCTTTGATGGCACGATCTTATCTTCCCAGCAAGGT TTCAGAGATTGTTGCAATTTGGAGGAAAGACCTGAACAAGGTCAATCCAAAAGCTGCAGAATCTCTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAT GATTGGCAAGTTGCTTTATCTGTCGAATCTAGAGCTGCAGGGACAAGGGGTGTGCATCCTCCCGCAGAGGACTACCAATACCATGCTGATAAACCTCACA TCACCCTCGTGGAGGCTTTCAGAAACATGCAAGTAGAAGAGGAGGAACCTCTTGAAAATGGAGACTTTGATCATGAGTCTGATGAACAGAATGGAGACGA ACATAATGCCGAGGAACAGAATGGCGAAGAAGGGAGCCAAGAGGAAGCAGTTGTGGTGGATGCAGATTCCACAGATGGTGCTGTACTTGTTAATGGAAAC GAACCTGAGGAAGAGTGGGGTACGAATAATGAAGAAACCCCGTCAGCCTAA
AA sequence Show only first row Show all	>Potri.001G179200.9 pacid=42792325 polypeptide=Potri.001G179200.9.p locus=Potri.001G179200 ID=Potri.001G179200.9.v4.1 annot-version=v4.1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILVSLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMYIRVYNYNTMDKIKVLEAHTD YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP YLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRIVIGYDEGTIMVKIG REEPVASMDNSGKIIWAKHNEIQTVNIKSVGADFEVTDGERLPLAVKELGTCDLYPQILKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSAD GEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIHGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLFWADSGDLVAIASDTSFYILKYNREIVSSYL DNGKPVDEQGIEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLAGQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM RGDLERASEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEAAKEIASEVQSESKWKQLGELAMSSGKLEMAEECMRHATDLSGL LLLYSSLGDAEGISKLGSLAKEQGKINVAFLCLFMLGKVEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFD DWQVALSVESRAAGTRGVHPPAEDYQYHADKPHITLVEAFRNMQVEEEEPLENGDFDHESDEQNGDEHNAEEQNGEEGSQEEAVVVDADSTDGAVLVNGN EPEEEWGTNNEETPSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	1.00	0.9753
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	2.44	0.9420
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	3.00	0.9502	Pt-POK.1
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	3.16	0.9374
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	4.69	0.9599
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	8.12	0.9193
AT1G50120			unknown protein		Potri.007G071000 [exp]	8.77	0.9416
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	9.48	0.9426
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	9.48	0.9202	SYP41.2
AT1G26300			BSD domain-containing protein ...		Potri.010G137900 [exp]	12.00	0.9376

Compare expression of checked genes

Potri.001G179200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.