Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79990 222 / 1e-75 structural molecules (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056100 [exp] 259 / 2e-90 AT1G79990 223 / 5e-76 structural molecules (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011465 [exp] 149 / 3e-42 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 142 / 7e-40 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10035895 [exp] 120 / 4e-36 AT1G79990 125 / 8e-35 structural molecules (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09801 [poplar] [flax] SYS1 Integral membrane protein S linking to the trans Golgi network
Representative CDS sequence Show only first row Show all	>Potri.001G179500.2 pacid=42793588 polypeptide=Potri.001G179500.2.p locus=Potri.001G179500 ID=Potri.001G179500.2.v4.1 annot-version=v4.1 ATGTTCTATGGTGCAGAGGTATGGGATCCATGGCTAATAGCAGCCCAAATCGTATGCCTTCAGTGCCTTTACTACCTCACTCTTGGTTTCTTTTTATGTT TTCTTGTTGGCACTCGCGTCTCTCGCTTGACTCTCGTTTATTTCTTTGATTTCGCCACTATCACTACCTCTACTGTCACCGGTCGCTGTGTCATTGCCTC CCTTCTCCCTTCCTCCTTTGCTGGAGCTGGGTATATGCTGTATTTGATTGAGAGGTCAAAGAAGTGCTTAGATTTTTCAGCCACCCTCTTTATCATCCAT TTGTTTATATGCATCATATATGGAGGCTGGCCTTCCTCGATAACATGGTGGGTCGTTAATGGTACTGGGTTTGCTGTGATGGCCTGGCTTGGTAAATATT TGTGTAGCGAGCGTGAACTCCGGGAGATTCCCATTTCGCGATATCGATCCAATGTTTGA
AA sequence Show only first row Show all	>Potri.001G179500.2 pacid=42793588 polypeptide=Potri.001G179500.2.p locus=Potri.001G179500 ID=Potri.001G179500.2.v4.1 annot-version=v4.1 MFYGAEVWDPWLIAAQIVCLQCLYYLTLGFFLCFLVGTRVSRLTLVYFFDFATITTSTVTGRCVIASLLPSSFAGAGYMLYLIERSKKCLDFSATLFIIH LFICIIYGGWPSSITWWVVNGTGFAVMAWLGKYLCSERELREIPISRYRSNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79990			structural molecules (.1.2.3.4...		Potri.001G179500 [exp]	0	1
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	2.44	0.6979
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.002G162700 [exp]	12.84	0.6859	ATSTE24.2
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.016G143600 [exp]	18.27	0.7219
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	21.81	0.6206
AT2G25920			unknown protein		Potri.014G122900 [exp]	33.04	0.5732
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	40.92	0.6209
AT5G53920			ribosomal protein L11 methyltr...		Potri.011G116100 [exp]	43.55	0.6968
AT1G75140			unknown protein		Potri.002G262900 [exp]	45.29	0.6386
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	48.18	0.6338
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	70.81	0.6139

Compare expression of checked genes

Potri.001G179500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.