Plant FIBer expression Database

Potri.001G179600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16000 445 / 8e-146 MFP1 MAR binding filament-like protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025769
[exp]
351 / 8e-113 AT3G16000 239 / 3e-71 MAR binding filament-like protein 1 (.1)
Lus10025768
[exp]
181 / 1e-52 AT3G16000 141 / 3e-39 MAR binding filament-like protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.001G179600.1 pacid=42788831 polypeptide=Potri.001G179600.1.p locus=Potri.001G179600 ID=Potri.001G179600.1.v4.1 annot-version=v4.1
ATGACCATGAGCTTCTCAATGGGAAGCTCTTATTTTTTACACTCTCACTTTCCTTCCTCCACTTCTTCTTCTTCTTCTTCCCAACCTGTTTCCTTTCATG
TGAAGAACAACAGCAATAATAATGAAATGACCGGGAGGAGGAGAGTGGTTTCTGCTTGTATGGGTCAAGAGGATCCAATGGACATTGTTTTCAGAAAGAA
GAGAGCTATTCTTTTTTTGGGTATTTCAGTTCTTCCTTTCTTGCAACTCAGGGCCAGAGCTCTTGAAGGTCTTGTTACAAAAAGAAGAAATTTGGGAGGA
GAGGAGAGAAGAAACTGGAGAGAAACTAGAGGAACAGAAAATGGGGAAACTGTGAAGGAAACGAATGAGATAGAAGAAGCTACACTCATGGCACCAGAGG
AGGACCAAAAAGAAGAGCTAGCAATTCAAAGATATACACCGCCAAATCCCTTTCTGTCTCTCCTGAATGGCCTCGGCATATTTGGTACTGGTGTGCTTGG
TGCACTCTATGCATTGGCTCAGAAGGAAAAGAAAGCTACTGATAAAACAGTAGAATCTATGATATCTAAACTGAAAGAAAAAGAAGCTACCATTGAATCC
TTGGAGAAAAACTTTGAATCAAAGCTATTAAATGAACAGGAAGAACAGATGAAGCAACGGAAGAAGGCAAAGGAAGAACAACAGTTTTTATTGAGTCAGC
TAAACTCGGCAAACAGTATAATTGCAGGGTTAGGACAGGAGCTAAAAAATGAGAAAAGAATAATTGGGGAGCTTAGAGTTCAAGCAGATGGTCTAGAAAC
CAACCTCTCAAAAGCTGGGGAAGATAAAAAAGCTCTTGAACAACTGTTGAAGGAAAAACTGAGCATGATTGAAGCCTTACAAGATAAGATCAGCTTGCTT
AGTTCGGAGATCAAGGACAAGGAATATAATGCTCAAAATCTCAGCTCTTCACTTGCTGAGAAGGAATTGGAGCTAAAGAACTTGAATTACACGCATGAGC
AAACAAATGGTGAACTAGCGAAAGCATGCTCAGAGATCAAAGGATTGAAAGATGAACTACTGAAAAACAAAAAGGAACTAGAAATGAGGAATTCTGTGGT
GGATGAATTAAATTCAAAGATCAGTTCTTTAATTGTTGAGAGAGATGAATCTAGTAGGCAGCTTAATACTATTCAGGAGGAGTACAATGATCTGAAATCA
TCCTCTGAAAAGAAGGCTGCCCTGGATGCTACACTATTGAGAGAGAGAGAATATGAGCTTCATGTGCTGAAGGAAAAGCTTGAGGTTGCTTTGAATGAAG
CAAGTGGCAACCAAGCAAGGATTGATGACTTGACTTGGGAAAGGAATGATTTGAGAAGAATGCTTGATGATGAAGTGAGCAATGCCAAGAATCTAAAAAA
TGAGCTCCATAACACCCAGGAAGCCCTTGAGAAGTTGAGAGAGGAGGCCTCTGATCTGTCAGAACAGCTCGAGCTTTCACAAAACCAGTGCACTGAGCTT
CAGGCTGAGGTCTCAAGGATTCTGGCTGAGTTTGCTGAAGTTACAGAAACCCTGCAGAAGAGTGTTGAGAAGGCAAAACAAAGTGGTGACTTGTTAGCCA
GTGAGCTTACAGCAATGAAGGAACAATTGAGGAAAACTAAAGAGGAGCTGCAAGTTATGTCACAAGATCTGGAAATGGTGACTGAAAATCGTGATAGCTT
ACAAAAGGAGTTGGTAGATGCGTACAAGAAAGCAGAAGTCGCAGCCAATGAATTAAAAGCAGAGAAGAATATAGTTTCTTCTTTGAATAAAGAATTGCAG
AACTTGGAGAAGCAAATGTTAAAGGACAAGGAGTCAAGAAAATCACTTGAAACAGATCTAGAAGATGCCACTAAATCCCTTGATGAGATGAACCGAAATG
CTTTGATACTTTCTGGAGAGCTGGAGATGGCTAATTCTCGGATTTCAAGCGTTGAAGACGAGAAGCAGGTGCTTTACAAATCCCTAACTGAGCAGAAGAA
TGCAGCCAAAGAGGCCCAAGAGAATATGGAAGATGCTCATAACATTGTGGTGAGGCTTGGGAGTGAAAGGGAGGGTTTGGACAGAAAGGGAAAGAAACTT
GAAGGAGAATTGGCATCTGCTAAGGGTGAAATATTGCGATTAAGGAGTAAAATAAATTCTTCGAACACTGCTGTAAATGATCAGGAGAGACAGAAAACCG
AAGCTGAAGACTTGCTATCAAGGAGTAAAACAACAAATTCATCGAGCACTGTTGTAAATGAAGAGAAGTCAGAGGGAACTGAAGCTGAAGAGAAGGTCAC
AGTGAATGCAAAGAGAAGTGGTAGAACTAGAAGGAGAAGGGCTAGTTCGCAATGA
AA sequence
>Potri.001G179600.1 pacid=42788831 polypeptide=Potri.001G179600.1.p locus=Potri.001G179600 ID=Potri.001G179600.1.v4.1 annot-version=v4.1
MTMSFSMGSSYFLHSHFPSSTSSSSSSQPVSFHVKNNSNNNEMTGRRRVVSACMGQEDPMDIVFRKKRAILFLGISVLPFLQLRARALEGLVTKRRNLGG
EERRNWRETRGTENGETVKETNEIEEATLMAPEEDQKEELAIQRYTPPNPFLSLLNGLGIFGTGVLGALYALAQKEKKATDKTVESMISKLKEKEATIES
LEKNFESKLLNEQEEQMKQRKKAKEEQQFLLSQLNSANSIIAGLGQELKNEKRIIGELRVQADGLETNLSKAGEDKKALEQLLKEKLSMIEALQDKISLL
SSEIKDKEYNAQNLSSSLAEKELELKNLNYTHEQTNGELAKACSEIKGLKDELLKNKKELEMRNSVVDELNSKISSLIVERDESSRQLNTIQEEYNDLKS
SSEKKAALDATLLREREYELHVLKEKLEVALNEASGNQARIDDLTWERNDLRRMLDDEVSNAKNLKNELHNTQEALEKLREEASDLSEQLELSQNQCTEL
QAEVSRILAEFAEVTETLQKSVEKAKQSGDLLASELTAMKEQLRKTKEELQVMSQDLEMVTENRDSLQKELVDAYKKAEVAANELKAEKNIVSSLNKELQ
NLEKQMLKDKESRKSLETDLEDATKSLDEMNRNALILSGELEMANSRISSVEDEKQVLYKSLTEQKNAAKEAQENMEDAHNIVVRLGSEREGLDRKGKKL
EGELASAKGEILRLRSKINSSNTAVNDQERQKTEAEDLLSRSKTTNSSSTVVNEEKSEGTEAEEKVTVNAKRSGRTRRRRASSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16000 MFP1 MAR binding filament-like prot... Potri.001G179600
[exp]
0 1
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.006G160300
[exp]
2.23 0.9435
AT2G21370 XK1, XK-1 XYLULOSE KINASE 1, xylulose ki... Potri.009G122300
[exp]
8.36 0.9366
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.010G160200
[exp]
9.53 0.9183
AT1G22700 Tetratricopeptide repeat (TPR)... Potri.019G085200
[exp]
10.09 0.9152
AT1G53250 unknown protein Potri.011G112300
[exp]
10.58 0.9042
AT1G30610 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DE... Potri.001G459900
[exp]
12.68 0.9085
AT4G27340 Met-10+ like family protein (.... Potri.011G125700
[exp]
13.26 0.9088
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.013G103600
[exp]
15.00 0.9220
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Potri.005G197900
[exp]
15.49 0.9325
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600
[exp]
15.68 0.9284

Potri.001G179600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.