Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) AT2G25690 118 / 2e-30 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT3G22550 91 / 1e-20 Protein of unknown function (DUF581) (.1) AT3G63210 84 / 3e-18 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT1G79970 70 / 1e-13 unknown protein AT5G20700 58 / 2e-09 Protein of unknown function (DUF581) (.1) AT1G74940 55 / 2e-08 Protein of unknown function (DUF581) (.1) AT5G49120 50 / 3e-07 Protein of unknown function (DUF581) (.1) AT1G22160 50 / 3e-07 Protein of unknown function (DUF581) (.1) AT1G78020 47 / 3e-06 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245200 [exp] 285 / 4e-93 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 261 / 5e-84 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 125 / 3e-33 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 105 / 9e-26 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 105 / 1e-25 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 100 / 6e-24 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 66 / 4e-12 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 65 / 9e-12 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.018G146800 [exp] 54 / 3e-08 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025770 [exp] 189 / 6e-58 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 183 / 1e-55 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 186 / 4e-55 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 98 / 5e-23 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 96 / 3e-22 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 90 / 3e-20 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 89 / 7e-20 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 63 / 2e-11 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 57 / 2e-09 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10007668 [exp] 50 / 2e-07 AT3G22550 43 / 6e-06 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.001G179700.3 pacid=42790604 polypeptide=Potri.001G179700.3.p locus=Potri.001G179700 ID=Potri.001G179700.3.v4.1 annot-version=v4.1 ATGGCAGATTCTGATACAGAGACTAATTCTCAACCCGATACATTCAGTCTGAGACATTTAAGGAGCTCATTTTTCAATATTCCTGGTTTCTTTGTAGGAT GTGGTTATAGAGGTTCACAAGATTTTGACTCAGTTAGGAGTCCGCAATCTCCACTTGATTTCAGTTTTTTCACAAATCTTAGCAACCCATTTAGCAATAG GTCCCCCAGATTGCCTTGCCAAAATGTCCAAAAGAAATGGGACTGCAACAAAGTAGGTCTTGGCATAGTACATTTACTTGTTGATGAAACCAAACCTACC GGTGAAGTTCTTGATTCAGATAAGAGAAAGACTATAATTTTTGCACCACAAGTGAAGACCTTTTCTTCTGTGAAATCCAATTCTTTACCGAGAAACTACA CAATTTCACTATCCAGAACCAAGACTTCCAGTCCCCGACTAGGTAAATCAGATGGTGCCTTTGGGAGTGAGGGAGTGCTATTAGAAACTAAACCGTTTGA AAGCTCTTCTGTAATTGGCTTAGCAACTTCCAAACCCAACTTGAGTTCCCAAAAATTCTATTCAGAGAATATAACTACTAGTACAAGAAGTTTCCCGCTG GAAATCTGTGATTGTTCACAAACAAACAAATCTTTGGTGATCAAACCGAATTCACTTCCCATAACCGTTGGCTCTGGACAAGGATATGTAGGTTCTCTGT CTGCACGTGAGATTGAGCTATCTGAGGATTATACCTGTATAATTTCCCATGGTCCAAACCCTAAAACAACTCATGTTTTTGGTGACTATATTTTGGAATG TCACTCAAATGAGTTGTCCAATTTTGACAAAACAGAAAATCCGGGGATCAAATTGCCTCAAGAAGCTAAGCACCCAAAGCATCCAACCCCTTTTCCACCA GATGAGTTTTTTAGCTTCTGTTACTCTTGCAAAAAAAAATTGGAGAAGGCAGAAGACATTTATATGTACAGGGGTGAGAAAGTATTTTGCAGTTTTGATT GCCACTCTGAGGAAACTTTTGCTGAGCGGGAAACAGAGAAAACTTGCAACAAATCCTCCAAAAGCTCTCCCGGGTCAAGCTACCATGAAGATGTTTTCCT TATGGTTATGCCTATAGCTGAATAA
AA sequence Show only first row Show all	>Potri.001G179700.3 pacid=42790604 polypeptide=Potri.001G179700.3.p locus=Potri.001G179700 ID=Potri.001G179700.3.v4.1 annot-version=v4.1 MADSDTETNSQPDTFSLRHLRSSFFNIPGFFVGCGYRGSQDFDSVRSPQSPLDFSFFTNLSNPFSNRSPRLPCQNVQKKWDCNKVGLGIVHLLVDETKPT GEVLDSDKRKTIIFAPQVKTFSSVKSNSLPRNYTISLSRTKTSSPRLGKSDGAFGSEGVLLETKPFESSSVIGLATSKPNLSSQKFYSENITTSTRSFPL EICDCSQTNKSLVIKPNSLPITVGSGQGYVGSLSAREIELSEDYTCIISHGPNPKTTHVFGDYILECHSNELSNFDKTENPGIKLPQEAKHPKHPTPFPP DEFFSFCYSCKKKLEKAEDIYMYRGEKVFCSFDCHSEETFAERETEKTCNKSSKSSPGSSYHEDVFLMVMPIAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11460			Protein of unknown function (D...		Potri.001G179700 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	20.39	0.8078
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	22.18	0.8051
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	26.32	0.7809
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	28.91	0.8036
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.003G110800 [exp]	33.09	0.7729
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	35.09	0.7820
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	37.54	0.7914
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	37.69	0.7360
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	42.33	0.7312	ARF6.4
AT5G56890			Protein kinase superfamily pro...		Potri.003G039100 [exp]	52.80	0.7409

Compare expression of checked genes

Potri.001G179700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.