Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16010 949 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 259 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 236 / 5e-68 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 231 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 230 / 1e-66 RPF2 rna processing factor 2 (.1) AT5G02860 231 / 8e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 228 / 8e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 223 / 5e-64 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 223 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 222 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014100 [exp] 259 / 3e-75 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 237 / 1e-68 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 234 / 4e-68 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 233 / 1e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 233 / 3e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 225 / 6e-65 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G234500 [exp] 228 / 8e-65 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 224 / 2e-64 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 223 / 4e-64 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011464 [exp] 976 / 0 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10043417 [exp] 261 / 7e-76 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 241 / 5e-70 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 235 / 2e-67 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 234 / 4e-67 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 229 / 6e-66 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 225 / 2e-64 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 225 / 4e-63 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 224 / 4e-63 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018567 [exp] 219 / 4e-62 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G180000.1 pacid=42793221 polypeptide=Potri.001G180000.1.p locus=Potri.001G180000 ID=Potri.001G180000.1.v4.1 annot-version=v4.1 ATGTCTTCTCTCTTAGTGCAGAAGTCTGTGTCCCAAATGGCTAAAATGGTGGTTCTAAGACACATTGCTTCAAAGCGATCAATATCAACTTTTCCTTTTC TCTCTCAGAGAATTAAACAAACAGAAAAAGAAATAGTTGAAATGTTCAAGGTACCCAGTTCAAAGGATGATGAAATGCAAAACTTGCCCACGCAAAATAG CAAGTTCTCGAGGAGAGACCCTTCGGTTAGGACATTAGATGAGAGGTTTATAAGGATTTTGAAGATATTTAAGTGGGGGCCTGATGCTGAAAAGGCCTTG GAAGTGCTCAAGTTGAAAGTGGATCATCGACTGGTTCGTGAGGTTTTGAAGATAGATGTTGAGATTAATGTTAAGATTCAGTTTTTCAAGTGGGCTGGCA AGAGGAGGAATTTTGAGCACGATTTGACTACTTATATGCCTCTAATCCGTTGTTTGGATGACTGTGGGTTATTTGGTGAAATGTGGAAGATGATCCAAGA AATGGTCAGGAGCCCGACGTGTGTTATTGGTCCGGCTGATTTGTCTGAAGTTGTGAAGATATTGGGCAAGGCCAAGATGGTGAATAAGGCACTTTCTGTC TTTTACCAGATAAAGAGTCGCAAGTGCAAACCAACGGCGAGCACCTACAACTCTATGATTTTGATGTTGATGCAAGAAGGGCATCATGAAAAAATTCACG AGCTTTACCATGAGATGTGTAATGAGGGTGACTGTTTTCCAGACACAATGACATATAGTGTGCTTGTTTCGGCGTTTGTGAAATTGGGTCGGGATGATTA TGCTATAAGGTTGTTCGATGAGATGAAGGCCAATGGCTTGCATCCAACTGCAAAGATTTATACTACCTTGCTGGCAATCTACTTCAAGTCAGGTGATGAG AAAGCTTTGGGTTTGGTGCAAGAGATGAAGGATAAGGGCTGTGCACCTACTGTCTTCACTTACACCGAGTTGATTAAGGGGCTAGGAAAATCTGGGAGGG TTGAAGATGCTTACAGTGTATTCTTGAATATGTTAAAGGATGGTTGTAAGCCTGATGTTGTGCTGATAAACAATTTGATCAACATTTTTGGAAAAGCAGG TCGCTTGGAAGATGCGCTTAAGCTTTTTGACCAGATGAGGTCTTTGAAGTGCGCGCCAAATGTGGTTACATACAACACTGTAATTAAGGCTTTATTTGAA TCCAAAGCTCCAGCTTCCGAGGCTGCTTCATGGTTTGAGAAGATGAAGGCAAATGGTGTTACTCCCAGCTCGTTTACTTACTCAATTCTTATTGATGGTT TTTGCAAAACAAATAGAGTTGAGAAAGCTTTGTTGCTTCTTGAAGAGATGGATGAAAAGGGTTTTCCGCCTTGTCCAGCTGCCTATTGCAGCCTTATCAA CGCTCTTGGAAAGGCAAAACGATATGAAGCTGCAAATGAGTTATTTCTGGAGTTGAAAGAGAATTGTGGACGTTCAAGTGCTCGTATATATGCTGTGATG ATAAAAAATCTTGGAAAGTGTGGCCGTCCGAGTGAGGCAGTAGATCTTTTCAACGAGATGAAGAAAATTGGATGCAATCCTGATGTTTATGCTTACAATG CACTCATGTCAGGGTTGGTAAGGGCTGGCATGATAGAAGAAGCTTTTTCTGCGCTCAGAACCATGGAAGAAAATGGTTGCACTCCAGACTTAAACTCGCA TAACATTATTCTAAATGGCCTGGCTAGGACAGGTCGCCCAGAACAGGCAACTGAAATGTTTATGAAGATGAAAGATTCGTTGATCAAGCCAGATGCAGTG TCGTATAACACCATTCTTGGCAGTCTGAGCCGCTCTGGCATGTTTGAGGAGGCTGCAAAGCTGATGAGAGAGATGGGTTCAAGAGGATTTGAATATGATC ACATCACTTACTCATCAATTCTTGAGGCGGTTGGTAAGGTTGATGAAGATGATGAACCCAACTTTCCATGA
AA sequence Show only first row Show all	>Potri.001G180000.1 pacid=42793221 polypeptide=Potri.001G180000.1.p locus=Potri.001G180000 ID=Potri.001G180000.1.v4.1 annot-version=v4.1 MSSLLVQKSVSQMAKMVVLRHIASKRSISTFPFLSQRIKQTEKEIVEMFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKAL EVLKLKVDHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSV FYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDE KALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFE SKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVM IKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAV SYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDEPNFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	0	1
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	3.00	0.8819
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	3.87	0.8573
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	4.58	0.8424
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	6.92	0.8451
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	7.48	0.8669
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	13.60	0.8494
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	14.14	0.8552
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	14.49	0.8167
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	15.23	0.8403
AT3G14120			unknown protein		Potri.001G165900 [exp]	15.62	0.7772

Compare expression of checked genes

Potri.001G180000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.