Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79950 1042 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20720 263 / 1e-72 RAD3-like DNA-binding helicase protein (.1) AT1G20750 232 / 2e-62 RAD3-like DNA-binding helicase protein (.1) AT1G79890 145 / 3e-35 RAD3-like DNA-binding helicase protein (.1) AT1G03190 139 / 1e-33 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT2G05635 48 / 3e-06 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008700 [exp] 235 / 2e-63 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 148 / 3e-36 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 137 / 4e-33 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011460 [exp] 1264 / 0 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 1222 / 0 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 223 / 4e-59 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 212 / 7e-56 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 148 / 5e-36 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 137 / 7e-33 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10037548 [exp] 110 / 2e-24 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 61 / 2e-09 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06733 [poplar] [flax] DEAD_2 DEAD_2 CL0023 [poplar] [flax] P-loop_NTPase PF13307 [poplar] [flax] Helicase_C_2 Helicase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G180200.4 pacid=42792066 polypeptide=Potri.001G180200.4.p locus=Potri.001G180200 ID=Potri.001G180200.4.v4.1 annot-version=v4.1 ATGCCGACCTACAAGATAAGGGGAATCGACGTTGATTTCCCGTTCGAGGCTTACGATTGTCAGCTCGTTTACATGGAAAAAGTCATACAGTCCCTCCAAA ACAAATGTAATGCCCTTTTGGAGAGTCCAACGGGAACCGGGAAAACTCTATGCCTTCTTTGTGCCACATTGGCTTGGAGGAAGAGTTTAGGTGGATTTTC GACTGGTAAGATTGAAAGGAATGGTCGGATTGCGGGTGGTAAATTGGATATTGTGCCATCATCACAATCTGAGGATCGCAATCTTCCGACTATAGTGTAT GCTTCACGCACGCACAGCCAACTTCGGCAAGTGATTCAGGAGTTGAAGAGGAGCAGCTACAGGCCTAAAATGGTAATATTAGGATCTCGGGAGCAGTTAT GCATTCACGAGGAAGTCAGCTTACTACGTGGAAAAGTACAGAATAATGCATGCCATCTTATTTGCAAAACACGGGGAAAGCGTCAATGCACCCATTATTC CCGTGTTGCAGATTATGTGAAATGCAATCCCCATCTTGGAGATGAGCCTGTCGACATAGAGGATTTGGTTAATATTGGAAGAACATTTGGACCATGCCCT TACTACATATCAAGGGAGCTCCACAAGGTTGTTGATATTTTGTTTGCACCTTATAACTACCTTATTGATCGTGGAAATCGAAAATCTCTTGCCATTGATT GGGACAACAGTATACTGATATTTGATGAAGCTCATAACCTGGAAAGCTTATGTGCAGATGCAGCCTCTTTTGACTTGCCTTCTTGGCTTCTCACAGCTTG CATTTCTGAAGCAAAATCTTGTATTGACCTTTCTGTGACAAGGAGGGAAGAATCAAATGACAAATCATGGAATCCAGATAATTTTGCTATTCTCAGAGCA CTTCTTTTGAAGCTTGAGAAGCGGATTGCTGAAGTGCCCATTGAATCCAAAGAATTGGGATTCACCAAACCTGGACCTTACATTTATGAGCTTCTTGCTG ATCTTAATGTTACACACGACACTGCAACTAAGATCATTGATATAATCAAAGATGCTGCTGTTCTCCTTGAAGAAGATAAGCAGGACAAGTCAAAAGGCAC TGGTTGCAGGCTGGAAAGCATTAGTGATTTCCTTCAAATAATTTTTAGAGAAAAGAACAACTCCCATGCGAATTTCTATCGAGTTCATGTGCAGGAAGGT GAGGCAAATGCTGCAGATGTCTTGAAAGGTAAGCCATCTAGAACGCTCAGTTGGTGGTGTTTTAATCCCGGAATCGCCATGCAAGAGTTCTCTCGCATGG GTGTTCGCTCTATTATTTTGACATCCGGAACATTATCTCCCTTGGATTCTTTTGCACAAGAGTTGAAACTAGATTTTCCCATTCGGCTGGAAAACCCTCA TGTCATATCCTCAAATCAGATATGGGCTGGTGTTGTACCAGCTGGTCCATCAGGTCGCTCATTGAACTCATCTTATAGAACCCGTGATTCTCTAGAATAC AAACAGGAGCTTGGAAATGCTATTGTCAATTTTGCCCGAATAGTACCTGATGGACTGCTTGTATTCTTTCCATCTTACTACCTTCTGGATCAATGCATTA GTTGCTGGAAGAATATGAGTCAGGCAAATTCAACAACAATATGGGAAAGAATCTGCAAGCATAAGAAACCTGTTGTAGAACCTAGACAATCCTCACTGTT TCCTCTTGCAATTGAGGACTATTTGGCTAAGTTGAAGGACACCTCAACTTCTGGTGCAGTATTTTTTGCTGTTTGTCGTGGCAAGGTGAGTGAAGGATTA GATTTTGCTGATCATGCTGGAAGAGCCGTTGTCATCACTGGCATGCCATTTGCCATGAGGACCGATCCTAAGGTTCGTTTGAAGCGTGAATACTTGGATG GACAGACACACTCACAAAGAGATGGATGTAAGTTGCAGGTTCTAAGTGGAGAAGAGTGGTATGGTCAACAGGCATCACGGGCTGTAAATCAGGCTGTTGG ACGTGTAATCCGTCATCGCTATGATTATGGAGCAATTATTTTTTGTGATGAAAGGTTTGAACATCGTAATCGCCAGACCCAAATATCACTTTGGATACAG CCTCACATCAAGTGTCACTCTAAATTTGGGGATGTGGTTTTTACATTGAGTCGTTTTTTCCGAGATGGAGGAAGTCGTGATGCTGCAAAGCTTAGGTCAA TACCAAGGGAAGACACTGAAAATATCAAAGAAGAAAAGAACACACAGCCTTTGGACAAATTTTACCTGGACAGTTTTCTTTCTATGAGGACACCGGATCA GGGTTGCTCTTCAAAATCATTATCTTCTTTACTTGAAGCTAAAAGAGGCAAGGATTCAAGCCTATCAGAGAACATTTTTCCTGCCAATCGCTCTTCTCTC TCTCCCTTCAAGGAAAGTCAGGATTTCAAATTAAATCATTCGCGCAGTGAAATCTATAATGAGAAAAAATTGTTAATTCCTGGGAGGATAAATATACAAC ATCAAAATGCTGAGATGATTGATTTGACTAGTAAATCTTTAATGGATGAAAGTCAAAGCAGAAAGGAGCTGGTGCCATGTTCTGCAAAGAAGCGAAAAGT TTTTCATGCAGAGTATTCAACTGGTCAGATTGGAAATACCCATGAGCATGCATCCAGTGCTGAAAGGTCACAATCAATTGCCCCCCTTTCCCTTTCTAGT TTGGTAAAACTAGAGAATCCACTGATTTCTGCAAATAAAGGCAGGCAAAATGCTCAAGTTAGCTCAACATTGCCAATTAAAGATCATGCAATCACACATA AGGATGCTGAGATTCTCACTCAAAAAAACAAAGATGTTCAGTCTACTTCTGTGCCTCGCGATGATGAGCAAACAAGAGGATCAGCGTTTCTCATTCAGGT TAAAGAGAAACTTAACGCCGCAGAATATAAAGAATTTGTGGAGTTTATGAAGGCACTTAAGTCCAAAGCAATGAAGATAGGCCACGTTTTACAGTCTATC GTGAGATTATTTTCTGGACCAGAGAGATTTCCTCTTCTTAAAAGATTCAAGGATTTTGTTCCCGCAAAGTACCACTCTTTGTACGAGCATTATCTTGAAG GAAATGACGATACACTCGGCAATCAGACATAA
AA sequence Show only first row Show all	>Potri.001G180200.4 pacid=42792066 polypeptide=Potri.001G180200.4.p locus=Potri.001G180200 ID=Potri.001G180200.4.v4.1 annot-version=v4.1 MPTYKIRGIDVDFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGGFSTGKIERNGRIAGGKLDIVPSSQSEDRNLPTIVY ASRTHSQLRQVIQELKRSSYRPKMVILGSREQLCIHEEVSLLRGKVQNNACHLICKTRGKRQCTHYSRVADYVKCNPHLGDEPVDIEDLVNIGRTFGPCP YYISRELHKVVDILFAPYNYLIDRGNRKSLAIDWDNSILIFDEAHNLESLCADAASFDLPSWLLTACISEAKSCIDLSVTRREESNDKSWNPDNFAILRA LLLKLEKRIAEVPIESKELGFTKPGPYIYELLADLNVTHDTATKIIDIIKDAAVLLEEDKQDKSKGTGCRLESISDFLQIIFREKNNSHANFYRVHVQEG EANAADVLKGKPSRTLSWWCFNPGIAMQEFSRMGVRSIILTSGTLSPLDSFAQELKLDFPIRLENPHVISSNQIWAGVVPAGPSGRSLNSSYRTRDSLEY KQELGNAIVNFARIVPDGLLVFFPSYYLLDQCISCWKNMSQANSTTIWERICKHKKPVVEPRQSSLFPLAIEDYLAKLKDTSTSGAVFFAVCRGKVSEGL DFADHAGRAVVITGMPFAMRTDPKVRLKREYLDGQTHSQRDGCKLQVLSGEEWYGQQASRAVNQAVGRVIRHRYDYGAIIFCDERFEHRNRQTQISLWIQ PHIKCHSKFGDVVFTLSRFFRDGGSRDAAKLRSIPREDTENIKEEKNTQPLDKFYLDSFLSMRTPDQGCSSKSLSSLLEAKRGKDSSLSENIFPANRSSL SPFKESQDFKLNHSRSEIYNEKKLLIPGRINIQHQNAEMIDLTSKSLMDESQSRKELVPCSAKKRKVFHAEYSTGQIGNTHEHASSAERSQSIAPLSLSS LVKLENPLISANKGRQNAQVSSTLPIKDHAITHKDAEILTQKNKDVQSTSVPRDDEQTRGSAFLIQVKEKLNAAEYKEFVEFMKALKSKAMKIGHVLQSI VRLFSGPERFPLLKRFKDFVPAKYHSLYEHYLEGNDDTLGNQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	1.73	0.8554
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	2.64	0.8704
AT3G59670			unknown protein		Potri.013G127100 [exp]	3.16	0.8482
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	3.46	0.8199
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	5.65	0.8338
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	5.83	0.7722
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	6.92	0.8435
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	8.24	0.8629	CPE902,Pt-SMC2.2
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	8.48	0.8322	NFC903,Pt-MSI2.1
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	9.79	0.7874

Compare expression of checked genes

Potri.001G180200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.