Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52330 193 / 6e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT4G13270 146 / 1e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G055000 [exp] 320 / 1e-111 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G159400 [exp] 142 / 8e-42 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 60 / 8e-11 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 52 / 8e-08 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 43 / 6e-05 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011458 [exp] 174 / 2e-54 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10037534 [exp] 174 / 4e-54 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10043216 [exp] 172 / 2e-53 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 164 / 2e-50 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 163 / 6e-50 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 139 / 2e-40 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 41 / 0.0003 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 40 / 0.0006 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G180600.5 pacid=42787706 polypeptide=Potri.001G180600.5.p locus=Potri.001G180600 ID=Potri.001G180600.5.v4.1 annot-version=v4.1 ATGGCTCTTCCCAAAAGTACTGAACCGCCACTTCCACTTTCACCAACTCATTGCTATACTCTAATACCATGTGATCAGCATGAAGAAGGAGGCGTTGTGT TACCTTTTTACCGCCACCCCACCACTCAGGACTGCCGTCGATGGCCAATGATAATCGCTATAATATTCCTCCTCCTCCTTTCAACGCTTGTCTATGTTTT TTGGCCCTCCGATCCCACGGTCAAGGTCGTGAGGCTGCGCCTAAACAAGATACACATACACACCTTGCCTATAATTAACATTGACATATCCTTGTATGTT TCTTTGAAAGTACGCAACGTCGATGTGTATTCCATGGATTTCAGAAGTCTTGATGTTGCTGTAAAGTACAGAGGGAAGAGGCTGGGTCACGTGAGATCTG ATCACGGTCACGTGAGGGCACTAGGATCATCCTACGTGCATGCTGGAGTAGATTTTAGTGGGATCAGTGTTTTGTCTGACGTGGTCTCCTTGCTCGACGA CTTGGCTAGGGGTACGGTGCCGTTTGATACTGTCACCGAGGTTTCTGGCAGGCTTGGGTTGTTGTTCTTTGGGTTCCCTATGAAGGCAAAATTGTTCTGT GCGGTTCTGGTAAATATAAATAACCAGACAATTGTTCGTCAGACTTGTTACCCTGAGGTCAGTAGGCATTGCTCTCTTTGTTACTTACTATATATTGTTA TTGGCAATGGCGTTGGGGGTGGCCATTGCTGA
AA sequence Show only first row Show all	>Potri.001G180600.5 pacid=42787706 polypeptide=Potri.001G180600.5.p locus=Potri.001G180600 ID=Potri.001G180600.5.v4.1 annot-version=v4.1 MALPKSTEPPLPLSPTHCYTLIPCDQHEEGGVVLPFYRHPTTQDCRRWPMIIAIIFLLLLSTLVYVFWPSDPTVKVVRLRLNKIHIHTLPIINIDISLYV SLKVRNVDVYSMDFRSLDVAVKYRGKRLGHVRSDHGHVRALGSSYVHAGVDFSGISVLSDVVSLLDDLARGTVPFDTVTEVSGRLGLLFFGFPMKAKLFC AVLVNINNQTIVRQTCYPEVSRHCSLCYLLYIVIGNGVGGGHC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52330			Late embryogenesis abundant (L...		Potri.001G180600 [exp]	0	1
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	1.00	0.9640
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	2.82	0.9459
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	3.46	0.9392
AT1G16290			unknown protein		Potri.010G172300 [exp]	3.46	0.8865
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	4.89	0.9288
					Potri.009G135000 [exp]	5.65	0.9029
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	6.32	0.9182	Pt-ATNAC2.2
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	7.00	0.9054
AT2G03360			Glycosyltransferase family 61 ...		Potri.008G092700 [exp]	8.94	0.8900
AT5G54130			Calcium-binding endonuclease/e...		Potri.012G007600 [exp]	8.94	0.8787

Compare expression of checked genes

Potri.001G180600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.