Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79915 308 / 5e-104 Putative methyltransferase family protein (.1) AT5G27410 51 / 1e-06 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G27400 50 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G63855 44 / 1e-05 Putative methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068400 [exp] 47 / 7e-06 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.005G109000 [exp] 47 / 7e-06 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.005G039000 [exp] 44 / 0.0001 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035886 [exp] 383 / 4e-133 AT1G79915 291 / 1e-97 Putative methyltransferase family protein (.1) Lus10025778 [exp] 373 / 1e-128 AT1G79915 272 / 2e-89 Putative methyltransferase family protein (.1) Lus10043153 [exp] 157 / 3e-42 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10026822 [exp] 45 / 5e-05 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3) Lus10031516 [exp] 44 / 0.0001 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015166 [exp] 44 / 0.0002 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041869 [exp] 42 / 0.0003 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10028415 [exp] 42 / 0.0004 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G181200.1 pacid=42789186 polypeptide=Potri.001G181200.1.p locus=Potri.001G181200 ID=Potri.001G181200.1.v4.1 annot-version=v4.1 ATGGAGGAGGAGGGCCAAGAGGATCATGTGATGAGCGAGGTTCATCTTGGTTGCCCACCTGGCTCCTCTGGGCCCCATATTTCTCATTTCACCATCTCCA TCCCGCCTGGTGTTGATTGTGGAAGATTTAATAATCTGTTCAAAGATGAGCAAGTTCCTATGCACCAAATGGTTTGTGTGGATGAAGATGGTGATCTTAT ATTAACCAGACGCCATGCTCATCACTATTTGCCGACTCGTAGTTTTAGTGTAACCATCCAGCATAATATCACATCATCAATTTCAAATGTTGGGTTGCAG GTTTGGAAGGCTGAATTACTGTTATCTGATTTTGTATTGCATAAGATGTTGACTTCATCTGATTTTGATGAGATTGTTTCATTAGAACTTGGAGCTGGAA CAGGGCTAGTCGGTATGTTGCTTGCACATGTTGCTAAAACAGTGTTCCTAACAGACCGTGGAGATGAAATCCTTGACAACTGTGCAAGTAATGTTGATCT CAATTCTGAAGTGTTAAACTATCAAGGAAGCATTCATGTCCGTGAACTTGATTGGATGGGCTCCTGGCCACCATCAACAAGTTCAGGAAATTCTACGTGT CATAAAAGTTATTCTTGGACGTCCTCGAATGTTGAAGAAGCTGAGAGAGCTGCTTTACTTGTAGCTGCTGATGTAATTTACAGTGATGATCTAACTGATG CTCTTTTCTGTGTTCTGGAGAAACTAATGTCCCTTAGTCCAAAAAAGGTTTTGTACTTGGCGTTGGAAAAGCGCTACAACTTCAGTCTAGATGATCTTGA TGTTGTGGCAAATGGTTACTCACATTTCCGAAGTTATCTTAGAGGGCAGGAAGACTATGACAACCTTAAACACGGATCCTCCCCTTGTTTTGTGGGAAAA TGTCTTGACCTGTCATTAATTCCGCAATATGTTCGAGAATATGAGAGAGGAAATGATGTAGAGCTTTGGCAAATCATGTACAATGCAAGAAAACCTAACT TGGGGGATTCTTGTGACTGA
AA sequence Show only first row Show all	>Potri.001G181200.1 pacid=42789186 polypeptide=Potri.001G181200.1.p locus=Potri.001G181200 ID=Potri.001G181200.1.v4.1 annot-version=v4.1 MEEEGQEDHVMSEVHLGCPPGSSGPHISHFTISIPPGVDCGRFNNLFKDEQVPMHQMVCVDEDGDLILTRRHAHHYLPTRSFSVTIQHNITSSISNVGLQ VWKAELLLSDFVLHKMLTSSDFDEIVSLELGAGTGLVGMLLAHVAKTVFLTDRGDEILDNCASNVDLNSEVLNYQGSIHVRELDWMGSWPPSTSSGNSTC HKSYSWTSSNVEEAERAALLVAADVIYSDDLTDALFCVLEKLMSLSPKKVLYLALEKRYNFSLDDLDVVANGYSHFRSYLRGQEDYDNLKHGSSPCFVGK CLDLSLIPQYVREYERGNDVELWQIMYNARKPNLGDSCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79915			Putative methyltransferase fam...		Potri.001G181200 [exp]	0	1
					Potri.003G217500 [exp]	9.89	0.8757
AT2G44420			protein N-terminal asparagine ...		Potri.009G023200 [exp]	11.00	0.7861
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.014G111700 [exp]	12.20	0.7691	Pt-IAA4.2
AT1G13195			RING/U-box superfamily protein...		Potri.010G053000 [exp]	14.14	0.8346
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Potri.014G067500 [exp]	15.58	0.8703
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107300 [exp]	16.12	0.8720
AT3G05250			RING/U-box superfamily protein...		Potri.005G035600 [exp]	21.90	0.8626	RZF.2
AT5G48630			Cyclin family protein (.1.2)		Potri.014G194900 [exp]	23.68	0.8341
AT2G25740			ATP-dependent protease La (LON...		Potri.006G236400 [exp]	27.45	0.8416
AT1G06930			unknown protein		Potri.019G127400 [exp]	28.77	0.8596

Compare expression of checked genes

Potri.001G181200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.