Plant FIBer expression Database

Potri.001G181800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15270 52 / 5e-11 Translation machinery associated TMA7 (.1)
AT3G16040 40 / 3e-06 Translation machinery associated TMA7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037543
[exp]
42 / 5e-07 AT1G15270 90 / 5e-26 Translation machinery associated TMA7 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09072 TMA7 Translation machinery associated TMA7
Representative CDS sequence
>Potri.001G181800.2 pacid=42793505 polypeptide=Potri.001G181800.2.p locus=Potri.001G181800 ID=Potri.001G181800.2.v4.1 annot-version=v4.1
ATGTCTTCCAAGCTAGGTGGAAAAGCTAAGCCTTTGAAGGCACCAAAGTCTGAGAAGAAGGATTACGACGAGACTGATCTGGCCAACATTCAAAAGAAAA
AGGATGAAGAAAAGGCACTTAAGGAGCTCAGAGCCAAGGCACAGCAGAAAGGGAGCTTTGGAGGTTCTGGGCTGAAGAAAAGTGGGAAGAAATGA
AA sequence
>Potri.001G181800.2 pacid=42793505 polypeptide=Potri.001G181800.2.p locus=Potri.001G181800 ID=Potri.001G181800.2.v4.1 annot-version=v4.1
MSSKLGGKAKPLKAPKSEKKDYDETDLANIQKKKDEEKALKELRAKAQQKGSFGGSGLKKSGKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15270 Translation machinery associat... Potri.001G181800
[exp]
0 1
AT5G18850 unknown protein Potri.008G197300
[exp]
3.46 0.8277
AT1G12910 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYA... Potri.014G140700
[exp]
4.00 0.7993
AT3G15352 ATCOX17 ARABIDOPSIS THALIANA CYTOCHROM... Potri.001G400000
[exp]
5.29 0.8259 ATCOX17.2
AT3G57870 SCE1A, SCE1, AH... SUMO CONJUGATING ENZYME 1A, EM... Potri.014G024950
[exp]
5.74 0.8369
AT3G07910 unknown protein Potri.009G071900
[exp]
8.83 0.7736
AT2G17710 unknown protein Potri.005G107800
[exp]
10.77 0.8426
AT3G59380 FTA, PLP, ATFTA... PLURIPETALA, farnesyltransfera... Potri.007G127500
[exp]
10.81 0.8251 FTA.1
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Potri.004G175900
[exp]
11.31 0.8256 Pt-SKP1.5
AT1G51060 HTA10 histone H2A 10 (.1) Potri.001G415700
[exp]
13.56 0.7887 HTA903
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Potri.008G164900
[exp]
16.24 0.8331

Potri.001G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.