Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79900 425 / 5e-151 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G46800 145 / 2e-41 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT2G33820 127 / 3e-34 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G01340 116 / 4e-30 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT1G34065 101 / 2e-24 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G01100 92 / 6e-21 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G39460 90 / 3e-20 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G30160 89 / 5e-20 Mitochondrial substrate carrier family protein (.1) AT5G19760 88 / 7e-20 Mitochondrial substrate carrier family protein (.1) AT1G07030 88 / 7e-20 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053900 [exp] 551 / 0 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 154 / 1e-44 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 149 / 1e-42 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 131 / 5e-36 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 129 / 5e-35 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.016G119500 [exp] 116 / 3e-30 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 106 / 1e-25 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 95 / 2e-22 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.006G252100 [exp] 96 / 3e-22 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037544 [exp] 460 / 1e-164 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 457 / 1e-163 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 157 / 1e-45 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 155 / 5e-45 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10027817 [exp] 110 / 8e-28 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10015420 [exp] 106 / 1e-26 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10005045 [exp] 102 / 5e-25 AT5G01340 518 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 100 / 3e-23 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 99 / 3e-23 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 96 / 1e-22 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.001G182000.1 pacid=42788429 polypeptide=Potri.001G182000.1.p locus=Potri.001G182000 ID=Potri.001G182000.1.v4.1 annot-version=v4.1 ATGGATTTTTGGCCAGAGTTTCTTGCTAGCAGCTGGGGTAGGGAGTTTGTGGCTGGTGGATTTGGTGGAATTGCTGGTATAATTTCTGGTTATCCACTTG ATACTCTACGTATTCGGCTACAGCAACCTAATTCTGGCTCCGCCTTCAGTATTCTTCGCCGAGTTATGGCCGGAGAAGGGCCTGCTGCTCTCTACAGAGG CATGGGTGCACCCCTCGCATCCGTCACCTTCCAGAATGCCATGGTTTTCCAGACCTATGCTATCCTCTCGAGAGCATTTGACTCGTCCGTTTCAGCTAGT GATCCTCCTTCTTACAAAGGTGTTGTTCTAGGAGGAGTTGGTACTGGGGCCATACAGAGCATTATGCTTTCTCCTGTAGAACTGGTAAAAATTCGCCTCC AATTGCAGAACGTAAGTCATGCAAATCTCCATGGGGCTGCTAGTTATAAAGGTCCAGTAAGTGTTGCCAAGAGCATACTGAAAACAGAAGGTATAAAAGG AATTTACCGGGGTTTTGTGATCACTGTCCTCAGAGATGCACCTGCTCATGGTGTATACTTTTGGACATATGAGTACATGAGAGAGCAGTTTCACCCTGGC TGCAGAAAGAATGGTCACGAAAGCTTAAGAACCATGCTGACAGCAGGAGGGCTAGCAGGAGTTGCAAGCTGGCTCTGCTGCTATCCATTAGATGTTGTGA AAACCAGATTACAAGCTCAAACACCATCATCATCATCCCCACTTAAGTATAAAGGCATTCTGGATTGCTTTCGCAGGAGTGTTAAAGAAGAAGGTTACTG CGTGCTTTGGAGAGGTTTGGGGACTGCCGTAGCAAGAGCTTTTGTAGTCAATGGAGCAGTATTTGCTGCTTATGAGATTGCATTGCGGTGTCTATTCAAC AATGGAAGCATTCAAACAGAGAACACTATCTAG
AA sequence Show only first row Show all	>Potri.001G182000.1 pacid=42788429 polypeptide=Potri.001G182000.1.p locus=Potri.001G182000 ID=Potri.001G182000.1.v4.1 annot-version=v4.1 MDFWPEFLASSWGREFVAGGFGGIAGIISGYPLDTLRIRLQQPNSGSAFSILRRVMAGEGPAALYRGMGAPLASVTFQNAMVFQTYAILSRAFDSSVSAS DPPSYKGVVLGGVGTGAIQSIMLSPVELVKIRLQLQNVSHANLHGAASYKGPVSVAKSILKTEGIKGIYRGFVITVLRDAPAHGVYFWTYEYMREQFHPG CRKNGHESLRTMLTAGGLAGVASWLCCYPLDVVKTRLQAQTPSSSSPLKYKGILDCFRRSVKEEGYCVLWRGLGTAVARAFVVNGAVFAAYEIALRCLFN NGSIQTENTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	0	1
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	6.32	0.8684	Pt-FIP1.3
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	7.74	0.8191
AT3G51730			saposin B domain-containing pr...		Potri.016G133400 [exp]	8.36	0.8503
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	9.89	0.8809	RD21.1
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.013G068900 [exp]	15.58	0.8510
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.004G062500 [exp]	16.91	0.8251
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	20.19	0.8544
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	23.23	0.8577
					Potri.018G099301 [exp]	24.12	0.8554
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	24.14	0.8480

Compare expression of checked genes

Potri.001G182000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.