Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16060 991 / 0 ATP binding microtubule motor family protein (.1) AT3G16630 612 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18550 195 / 6e-53 ATP binding microtubule motor family protein (.1) AT3G49650 185 / 4e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 179 / 1e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 175 / 3e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 174 / 5e-45 ATP binding microtubule motor family protein (.1) AT5G47820 170 / 7e-44 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 170 / 1e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 169 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053800 [exp] 1276 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.018G079800 [exp] 804 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G221400 [exp] 581 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G013500 [exp] 580 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 360 / 5e-117 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G058400 [exp] 189 / 2e-50 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 174 / 3e-45 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 173 / 1e-44 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 172 / 2e-44 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037546 [exp] 1085 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 1019 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10002876 [exp] 580 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023103 [exp] 579 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019245 [exp] 197 / 8e-54 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 196 / 1e-52 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036146 [exp] 172 / 2e-44 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 171 / 5e-44 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 171 / 6e-44 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 170 / 1e-43 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.001G182300.2 pacid=42789370 polypeptide=Potri.001G182300.2.p locus=Potri.001G182300 ID=Potri.001G182300.2.v4.1 annot-version=v4.1 ATGAACAACGGAATGGGAAGGCAGAGATCTCATCATCAAAGACAGTACTCATCTTCTGATAACAACAGCAACAGCAACGGCAACGGCAACGGAATTTTTC TGGAAAATGGGAGATGGCTTCAATCTGCTGGTCTTCAGCACCTTCAAAATAACAACTCTTCCTCCTCCTCTTCCTCTTCTTTAATTCCTCCTCTTCAGGA CTATAATCTCTATGGTGGTGGAGGAGGAGGGCAGGCATTGAGAATGTATGGGAATGCGCAAAGCAGTTTTAGTAGGGGAAATGAGTTTTATTCGGAGCCA ACAACACCTCCTGTTAGTTCAAGAGCTTCGAGCCAGAGGAAGAACGGGGAGGACTCACCAAATGAGTTCAGTCCTGGGCTCTTAGATCTGCATTCTTTTG ACACTGAGTTGCTTCCCGAGTTGCAAGTTCCAGGCTTGTATGATGGTTCTTCTCTTTTTCATCCTGTTCGAGGAAGAAGCTTTGATGATTCTTACCCTTA CATTTCAAACAATAAACAAACTGGCAGAGCTCCTGGCTTGCCTGATAACAACCTCCTGAAAAGCTTTGTTGCAGACAAAGAGAAGACAAGTTCTGTTGCA AAGATCAAAGTAGTGGTGCGCAAGAGACCATTGAATAAAAAGGAACTGGCAAAAAATGAAGAAGATATTATAGACACACACTCCAATTCTCTGACAGTTC ACGAGACTAAACTTAAGGTTGACCTAACAGAATACGTTGAGAAGCATGAATTTGTCTTTGATGCAGTGCTCAATGAGGAGGTCTCGAATGATGAAGTTTA TCATGAGACAGTGGAGCCCATAGTTCCAATAATTTTTCAACGGACCAAAGCAACTTGCTTTGCATATGGGCAAACAGGGAGCGGAAAAACCTATACTATG AAGCCTTTGCCCCTTAAAGCATCTCGAGATATCTTGAGGTTGATGCATCATACTTACAGGAACCAAGGGTTTCAGCTATTTGTGAGCTTCTTTGAAATTT ACGGAGGAAAACTATATGATCTTCTAAGTGATCGGAAAAAACTTTGCATGAGAGAGGATGGTAAGCAGCAGGTTTGTATTGTGGGTTTGCAAGAGTATAA AGTATCAGATGTAGAGACCATTAAGGACCTCATTGAGAAGGGAAGTGCCACAAGAAGTACTGGCACAACTGGTGCAAATGAAGAATCCTCCCGTTCACAT GCCATACTACAGCTTGCTATCAAGAGATCAGTTGATGGCAATGAGTCAAAGCCTCCACGCCCCATTGGCAAGCTCTCCTTCATAGATCTTGCAGGAAGTG AGCGTGGTGCAGATACCACAGATAATGATAAACAAACAAGGATGGAAGGTGCAGAGATTAACAAGAGTTTACTTGCATTAAAGGAGTGCATAAGGGCACT TGACAATGACAAGAGTCATATTCCTTTCAGAGGCAGTAAATTAACTGAGGTTCTAAGGGATTCTTTTGTTGGCAATTCACGCACTGTTATGATATCATGC ATTTCACCAAGCTCAGGATCATGTGAGCACACTCTTAACACCTTGAGATACGCTGACAGGGTGAAGAGCCTTTCAAAAGGGAACGCTTCTAAGAAGGATG TATTATCTTCAACTTTAAACCTAAAGGAATCAACTACTGTTCCCTTGTCCTCAGTTTTACCTGTTGCATCCACATTTGAGGACGATGCAAATGATGCATG GCCAGAACAAGATGAAAGAGATGATTTTGATGCATCAGAAGAAGATTCTTATGAACAGGAGAAACCAATATGGAAGGAGAATGGGAAGCTAGAGCCATAC AATCTTTCCATTTCAGAGGATAAAATACAGAAACCCAATGGTCAGACAAAATGGAGGGATATGCCAAAATCTAATCTCAAGAACTCCCATTCAGATAATG ATTTGAATGTGTTGCTACAGGAAGAGGAGGATCTTGTAAATGCTCATAGAAAACAAGTGGAAGAGACTATGAACATCGTGAGAGAGGAGATGAACCTGTT GGTTGAAGCAGACCAACCAGGAAATCAGCTCGATGATTACGTTGCTAAACTGAATGCCATTCTTTCTCAGAAGGCTGCAGGTATACTGCAGTTACAGAAT CGTCTGGCACACTTCCAGAAGCGTTTGAAGGAGCATAATGTTTTAGTATCTTCTTCTGGCAACTAG
AA sequence Show only first row Show all	>Potri.001G182300.2 pacid=42789370 polypeptide=Potri.001G182300.2.p locus=Potri.001G182300 ID=Potri.001G182300.2.v4.1 annot-version=v4.1 MNNGMGRQRSHHQRQYSSSDNNSNSNGNGNGIFLENGRWLQSAGLQHLQNNNSSSSSSSSLIPPLQDYNLYGGGGGGQALRMYGNAQSSFSRGNEFYSEP TTPPVSSRASSQRKNGEDSPNEFSPGLLDLHSFDTELLPELQVPGLYDGSSLFHPVRGRSFDDSYPYISNNKQTGRAPGLPDNNLLKSFVADKEKTSSVA KIKVVVRKRPLNKKELAKNEEDIIDTHSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYHETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM KPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKDLIEKGSATRSTGTTGANEESSRSH AILQLAIKRSVDGNESKPPRPIGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDKSHIPFRGSKLTEVLRDSFVGNSRTVMISC ISPSSGSCEHTLNTLRYADRVKSLSKGNASKKDVLSSTLNLKESTTVPLSSVLPVASTFEDDANDAWPEQDERDDFDASEEDSYEQEKPIWKENGKLEPY NLSISEDKIQKPNGQTKWRDMPKSNLKNSHSDNDLNVLLQEEEDLVNAHRKQVEETMNIVREEMNLLVEADQPGNQLDDYVAKLNAILSQKAAGILQLQN RLAHFQKRLKEHNVLVSSSGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	0	1
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	2.23	0.9115
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	4.89	0.8681
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	5.47	0.8730	XYL4.2
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	6.63	0.8825
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	8.77	0.8712
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	9.79	0.8489	Pt-CYCB2.2
AT2G45700			sterile alpha motif (SAM) doma...		Potri.006G218300 [exp]	10.24	0.8066
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	10.29	0.9002
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	10.39	0.8277
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	13.22	0.8746

Compare expression of checked genes

Potri.001G182300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.