Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33870 253 / 2e-79 Peroxidase superfamily protein (.1) AT5G24070 198 / 6e-59 Peroxidase superfamily protein (.1) AT2G43480 197 / 2e-58 Peroxidase superfamily protein (.1) AT2G38390 196 / 6e-58 Peroxidase superfamily protein (.1) AT1G05260 194 / 1e-57 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT1G49570 194 / 4e-57 Peroxidase superfamily protein (.1) AT3G21770 192 / 1e-56 Peroxidase superfamily protein (.1) AT1G44970 192 / 1e-56 Peroxidase superfamily protein (.1) AT5G22410 191 / 2e-56 RHS18 root hair specific 18 (.1) AT2G38380 191 / 4e-56 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053700 [exp] 536 / 0 AT4G33870 234 / 7e-73 Peroxidase superfamily protein (.1) Potri.007G067200 [exp] 238 / 1e-73 AT4G33870 253 / 2e-80 Peroxidase superfamily protein (.1) Potri.007G132800 [exp] 206 / 7e-62 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 204 / 3e-61 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 201 / 2e-60 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 198 / 3e-59 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 197 / 8e-59 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 194 / 1e-57 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 194 / 1e-57 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005679 [exp] 206 / 5e-62 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10013631 [exp] 206 / 6e-62 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10004859 [exp] 203 / 5e-61 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10027163 [exp] 201 / 3e-60 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10001324 [exp] 201 / 5e-60 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10039681 [exp] 199 / 1e-59 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10020312 [exp] 209 / 4e-59 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10015555 [exp] 199 / 4e-59 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10020994 [exp] 196 / 3e-58 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10004804 [exp] 197 / 4e-58 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G182400.2 pacid=42789063 polypeptide=Potri.001G182400.2.p locus=Potri.001G182400 ID=Potri.001G182400.2.v4.1 annot-version=v4.1 ATGTTGACATCGATCTTTGGAATAGGAAACATGAGGAAACTGAGCCTTCTTGTATTAATTCTTTGCATTTTGATCTCTGTCAAGAACCAAAATGCTGAGA TCAAGAAGAGCTCGTCATCATCAAAAACTGCAGTGAAATGGCCATATTCATCTTGGGATTCCTTTCCTTCCGTATTCTTGTCTCCTTTGACATCTATGGA AGACGATGATGGAGAAGTATCATGGCATTCAAACCGGTCTCTTGAGTATGATTTCTATCGTGATTCGTGCCCAGAGGCAGAAAGAATCATTCGCAGGGTG GTTCACGAGCTATATGAAGTCAACTCCAGTGTAGCTCCTGCTCTTCTAAGGCTCGTGTTTCATGATTGTTTTATTGAGGGGTGTGATGCATCTATTTTGT TGGATGCTGCTACAGGCATTGATTCCGAGAAAGACTCTCCTCCCAATAAAAACTTGAAGGGATTTGATATAATTGACAAAATCAAATCAGAGATTGAAAT GGTGTGCCCAGGAGTTGTTTCTTGTGCTGATATCGTTGCTTTAGCAGGCAGAGAAGGTGTTGTTCAGGCTGGTGGTCCATTCTATCCACTGTATACTGGC AGGAGGGATGCTATGCATTCTTTCCGAGATGTGGCAACGTCTGAGCTTCCTTCACCCAATGCTGATCTATCTGAAACCCTAGCATCTTTCGCATCTAGGG GTTTTGATTTAAGAGAAACTGTCAGTCTCCTGGGTGGTCACAGCATAGGAGTAATCCACTGCAAATTCTTCCAAAACCGTCTCTACAACTTCGGTAGGAC TAATAAGCCCGATCCTTCTCTGGATACAGGGTTTCTTAACCTACTGAGATCTAGATGCAATGACAGTAACTCATCGATGGCAGCATCGCCTTCGCCTTCG CCTTCCTTTAAAGCCACACCACCAGCACCGTCGACTTCCTGTGATGGCACCAACTCACCAGCACCGTCGACTTCCTGCGATGGCACCAAGTCACCAGCAC CGTCGACTTCCTTTGATGGCACCAAGTCACCAGCACCAGCACCGTCGACTTCCTTTGATGGCACCATGTCACCATCAACAGCACCTTCGCTTTCCTGTAG TGGATCACCATCTTCATCGTCCAGGGCAGCAGAAATGAGGGGCTCCCCATCATTATTGTCAGCACCATCACCTTCCTTGAAAGGTTCAATTTCTTCCCCA CCGTCATCATCAACACCTTCATCAGCTTCCTTCGAAGATTCACTGCTTTCCTCACTGGAGGAGCCAGGAATGAATATGGCCTATGAGGGCCCAGGAGTAG ATTTTGGCACGTTGTACTACCGCAGTCTTTTGCAAGGTAAAGGAATCCTTTATTCCGATCAGCAGCTAATGGCTGGGATAGATACTGGTATTTGGGTACG AGCATATGCTTCAGACATCTCCTTGTTCCCACGAGACTTTGCCCTAGCAATGATGAAGCTCTCGAATCTCAGATTCTTGACAGGATCAAAAGGCCAGGTC CGGCTCCATTGTTCAAAGGTGGCATGA
AA sequence Show only first row Show all	>Potri.001G182400.2 pacid=42789063 polypeptide=Potri.001G182400.2.p locus=Potri.001G182400 ID=Potri.001G182400.2.v4.1 annot-version=v4.1 MLTSIFGIGNMRKLSLLVLILCILISVKNQNAEIKKSSSSSKTAVKWPYSSWDSFPSVFLSPLTSMEDDDGEVSWHSNRSLEYDFYRDSCPEAERIIRRV VHELYEVNSSVAPALLRLVFHDCFIEGCDASILLDAATGIDSEKDSPPNKNLKGFDIIDKIKSEIEMVCPGVVSCADIVALAGREGVVQAGGPFYPLYTG RRDAMHSFRDVATSELPSPNADLSETLASFASRGFDLRETVSLLGGHSIGVIHCKFFQNRLYNFGRTNKPDPSLDTGFLNLLRSRCNDSNSSMAASPSPS PSFKATPPAPSTSCDGTNSPAPSTSCDGTKSPAPSTSFDGTKSPAPAPSTSFDGTMSPSTAPSLSCSGSPSSSSRAAEMRGSPSLLSAPSPSLKGSISSP PSSSTPSSASFEDSLLSSLEEPGMNMAYEGPGVDFGTLYYRSLLQGKGILYSDQQLMAGIDTGIWVRAYASDISLFPRDFALAMMKLSNLRFLTGSKGQV RLHCSKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33870			Peroxidase superfamily protein...		Potri.001G182400 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	1.41	0.9863	Pt-AGL8.2
					Potri.001G073350 [exp]	2.00	0.9858
					Potri.009G071750 [exp]	2.82	0.9826
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.007G119900 [exp]	3.46	0.9802
AT1G58400			Disease resistance protein (CC...		Potri.012G083700 [exp]	4.00	0.9659
					Potri.005G011350 [exp]	4.24	0.9648
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G127700 [exp]	5.65	0.9390
AT1G21240		WAK3	wall associated kinase 3 (.1)		Potri.009G154900 [exp]	6.32	0.9227
					Potri.009G112799 [exp]	8.12	0.9602
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	8.24	0.9357

Compare expression of checked genes

Potri.001G182400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.