Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16070 97 / 2e-25 unknown protein AT1G15260 91 / 6e-23 unknown protein AT3G24535 48 / 7e-07 unknown protein AT1G06923 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053600 [exp] 301 / 3e-105 AT1G15260 100 / 1e-26 unknown protein Potri.018G080001 [exp] 100 / 9e-26 AT1G15260 52 / 3e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035880 [exp] 169 / 9e-53 AT1G15260 94 / 4e-24 unknown protein Lus10025783 [exp] 156 / 6e-48 AT1G15260 97 / 3e-25 unknown protein Lus10011448 [exp] 132 / 6e-38 AT1G15260 89 / 9e-22 unknown protein Lus10037547 [exp] 101 / 3e-26 AT1G15260 88 / 2e-21 unknown protein Lus10023639 [exp] 85 / 1e-20 AT3G24535 72 / 4e-16 unknown protein Lus10034910 [exp] 85 / 2e-20 AT3G16070 72 / 3e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G182500.1 pacid=42790377 polypeptide=Potri.001G182500.1.p locus=Potri.001G182500 ID=Potri.001G182500.1.v4.1 annot-version=v4.1 ATGCAGCTAAGAGAATCCATTCATAAGACCAAGAAGTTCTTTCACAATGCTCTCCGAAACCTCAAGTCCATCTTCTTTGGTGGCTACCAAAAGCTGACCA AGCCTACTTCTTTCAAGCCCTTCTCACGCGGCAGCAGCAACGTGAAGAATTACCGGATAGATCAGTACTATGCTGATTTTTGCAAGGAATGGGAGTGTGA TCTGGAAAAGGCAATGAAAGGAAAGAGCAATAGTTTCATGGGGTCAAAAGAGCCAATGAGAGATGAAGATGTGAGTGATGAAAGTGAGATGAAGCTTGCA AACAGTCCGTCGAGGAAGAATGAAGGAGGAAAGGAAGAGAAGAGTAAGAAGATTTCCCAAGTACAAAAAGCGGAAGAAAAAAGCTCAAAGAACATGAATG AAAGCGGTTGTGTATTAGCACAGAAGATGAAGGAATTGGAAATAATGGACGTGACTGATGTAGAACATGTTTTGGATGTAGAAGAGGCACTCCACTACTA TTCTCGTCTCAAAAGCCCTGTGTACCTTGACATTGTCGACAAGTTTTTCACCAACATGTATACAGAATTTTCAGTTCCAAAGGCCTCTGCCAGCACCAAC AGTTCATAG
AA sequence Show only first row Show all	>Potri.001G182500.1 pacid=42790377 polypeptide=Potri.001G182500.1.p locus=Potri.001G182500 ID=Potri.001G182500.1.v4.1 annot-version=v4.1 MQLRESIHKTKKFFHNALRNLKSIFFGGYQKLTKPTSFKPFSRGSSNVKNYRIDQYYADFCKEWECDLEKAMKGKSNSFMGSKEPMRDEDVSDESEMKLA NSPSRKNEGGKEEKSKKISQVQKAEEKSSKNMNESGCVLAQKMKELEIMDVTDVEHVLDVEEALHYYSRLKSPVYLDIVDKFFTNMYTEFSVPKASASTN SS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16070			unknown protein		Potri.001G182500 [exp]	0	1
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	3.16	0.9243
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	3.60	0.8690
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	3.87	0.9150
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.017G130800 [exp]	7.74	0.9009
					Potri.001G168901 [exp]	7.93	0.8937
AT1G03440			Leucine-rich repeat (LRR) fami...		Potri.014G136100 [exp]	11.31	0.8345
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	13.26	0.8636
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Potri.012G131400 [exp]	13.96	0.8292
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	15.16	0.8834
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Potri.014G165700 [exp]	15.19	0.8336

Compare expression of checked genes

Potri.001G182500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.