Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79890 946 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G79950 198 / 4e-52 RAD3-like DNA-binding helicase protein (.1) AT1G20720 197 / 7e-52 RAD3-like DNA-binding helicase protein (.1) AT1G20750 110 / 3e-24 RAD3-like DNA-binding helicase protein (.1) AT1G03190 106 / 2e-23 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G09995 61 / 3e-11 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008700 [exp] 208 / 4e-55 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G180200 [exp] 204 / 3e-54 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 155 / 1e-38 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011447 [exp] 1027 / 0 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037548 [exp] 736 / 0 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011460 [exp] 201 / 4e-53 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 177 / 3e-45 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 176 / 7e-45 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 151 / 2e-37 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10037532 [exp] 124 / 2e-28 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 66 / 6e-11 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF13307 [poplar] [flax] Helicase_C_2 Helicase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G182600.1 pacid=42791293 polypeptide=Potri.001G182600.1.p locus=Potri.001G182600 ID=Potri.001G182600.1.v4.1 annot-version=v4.1 ATGGAATTTAGAGGATTTCCTTACAAGCCTTACTCCATCCAGATTGATTTCATGAAAGCTCTTTATCACTCCTTGAATCAAGGCGGCGTCTCCATCCTCG AGAGCCCCACCGGGACCGGCAAGACTCTGAGTATAATATGCAGTGCTTTGCAATGGGTGTATGATAGGAGGCAACAAGACAAGTCCAAAGTACAAGTTCA ATCTCCTCATCATTCAACAGATGATGCGCATATTGGCTCTGATGATGAACCTGACTGGCTCAGAAACTTTGTCCCCAACAAAGACAATCTTACGCAGGAG AAGAAAATCAACAAGAAATTCGGTTTTGGAGGATGTGATAGGAGGAGAAATCGCAAGGAAAGTTGCAAAGACCTGTTTTCACGTGATTTGGAGGAGGAGG ATTGTAATAAGAGGGGTGAGAATAAGTGTTCGCGGAAGAAAAATGATGGAGTGGAATTGAGTGATGATGAGTTTTTGTTAGATGAGTATGAAAGTGAAGA GGAAGGAGCTCTTGGAGGTGGGAAATCAAAGAGGAAGGCTGGTGGGGTTTCTATTAGTTCATCTAGTGATGAGGAAGGAGAAAAGGATGGCCCTGATGGT GAGGAGGAAGAGGAGGAGAAGGCGTTCAAGATTTACTTTTGTAGTCGGACGCATTCACAACTCTCACAGTTTATCAAAGAGTTAAGGAAAACTCTTTTTT CCAATGAAATAAATGTTGTGTGTTTGGGCTCCAGGAAGAATTTCTGCATTAACGAAGAGGTTTTGAAACTTGGGAGCTCTGTGCGTGTTAATGAAAGGTG CTTGGAGCTTCAGAAGAACAAGAAAAATGAAGTCTCCAAAATCAAGAATTTCAGCGCTGAGGGAAGAATACGTCGAACCAAGGCTTCTTCTGGCTGTCCA ATGCTTAGAAAACATAAACTACAGAAGGAATTTAGGAATGAGACATCTCAACATGGAGCATTGGATATTGAAGATCTTGTTCGCATTGGAAGAAGTATTG GAACTTGTCCATATTATGGCTCCCGAAGCATGGTCCCAGCAGCTGATCTTGTTGTTCTCCCCTATCAGTCTCTTCTATCAAAATCATCTCGTGAATCGCT TGGCCTCAATTTAAAGAATAGTATCATAGTAATAGATGAGGCTCACAATCTAGCTGACTCCCTCATCAGCATGTATGATGCGAAAATAACTTCATCACAG TTGGAGAGTGTGCACTCCCACATAGAGAAGTACTTCACAAGATTTCGCAATCTCTTGGGACCTGGCAATCGAAGATATATTCAAACTTTGATGGTCCTCA CTCGAGCTTTCCTGCAAACTCTAGATAACAAGAAGGATTTGAGTAATGTAAATAATTACCAAGCTGAAGAAATAGCTGCTGACATGAAAGCTGTCTGTGA CACTTCTATAGCCATTAATGATTTTCTATTTTCTCTCAATATAGACAACATTAATTTGGTTAAATTGCTACAGTATATAAAGGAAAGCAATTTGGTGCAC AAGGTCAGTGGGTATGGTGAAAAGGTAGCTAGCTTGCAGGAAGGTTTGGCTCTCAATCGTAATGGAGAATTTGGTGAGGAAGGAAGCACTCTTTCCAGTT TCCGGGCATTAGTGGACATGTTGATGTCACTGACAAATAATGATGGTGATGGACGGATGATAATCTCAAAAATGAGATCAACATGCTCTGGGCTACAAGG AGGTTTCTTAAAATATGTTATGCTCACAGGGGAAAAGATTTTCTCCGAGATTGTGGATGAAGCACATGCTGTCATATTGGCAGGTGGGACCCTGCAACCC ATAGAAGAGACAAGGGAGCGGCTGTTCCCATGGTTACCGCCAAATCAGCTGCATTTCTTTTCATGTAGTCATATTGTCCCTCCTGAGAGTATTTTACCAA TTGCAGTTTCACGTGGCCCTTCTGGTCAATCTTTTGATTTTAGCTACAGCTCGAGAAGCTCATTGGTTATGATAGAGGAGTTAGGGCTCTTGCTTTGCAA TTTGGTGGCATTTGTTCCTGAAGGGATTGTTGTGTTCTTCTCCTCATTTGAATATGAAGGACAGGTCTATGATTCATGGAAGAAGTCGGGCATTCTTGAA AGGATTATGAGGAAAAAGCGTATATTCAGAGAGCCGAGAAGTAACTCTGACGTGGAACTCATCCTCAAGGAATACAAGGAAACAATCGATGGATTGTCTA GTGGCACAAAAGAAGATGGAGTACGTCATAATGGTGCAGTACTCCTAGCTGTAGTTGGTGGAAAGATATCAGAAGGCATAAACTTCAGTGATGGGATGGG CCGATGCATAGTAATGGTTGGGCTGCCCTACCCAAGTCCATCTGACATGGAGTTGATGGAGAGGGTGAAGTATATTGAAAGTTTGGGAGAGCCAAACTGT GGTAAGCGTCCCGAAATTTCTGTTGGTGAGCACTATTACAATGGGGATGTTCAGACAGCTTTCAGTATCCTAAGAAGTTGCAGGCGCAGAGGAAAAGAAT ATTATGAAAATCTCTGCATGAAAGCTGTAAATCAATCAATTGGAAGAGCAATACGGCACATAAATGACTATGCAGCAATATTGTTGGTTGACATGCGATA CGCATCAGACTCCTCGAAAACAAGCTTCTCTCATCCAACAAACAAGCTTCCTCTGTGGATAAAAGATCGTCTTGTTTCTGCAACCAACAATTATGGTGAA GTTCATAGGCTACTGCATCAATTCTTCAAATACAATAAGAAGAGAGAGTGTCAATAG
AA sequence Show only first row Show all	>Potri.001G182600.1 pacid=42791293 polypeptide=Potri.001G182600.1.p locus=Potri.001G182600 ID=Potri.001G182600.1.v4.1 annot-version=v4.1 MEFRGFPYKPYSIQIDFMKALYHSLNQGGVSILESPTGTGKTLSIICSALQWVYDRRQQDKSKVQVQSPHHSTDDAHIGSDDEPDWLRNFVPNKDNLTQE KKINKKFGFGGCDRRRNRKESCKDLFSRDLEEEDCNKRGENKCSRKKNDGVELSDDEFLLDEYESEEEGALGGGKSKRKAGGVSISSSSDEEGEKDGPDG EEEEEEKAFKIYFCSRTHSQLSQFIKELRKTLFSNEINVVCLGSRKNFCINEEVLKLGSSVRVNERCLELQKNKKNEVSKIKNFSAEGRIRRTKASSGCP MLRKHKLQKEFRNETSQHGALDIEDLVRIGRSIGTCPYYGSRSMVPAADLVVLPYQSLLSKSSRESLGLNLKNSIIVIDEAHNLADSLISMYDAKITSSQ LESVHSHIEKYFTRFRNLLGPGNRRYIQTLMVLTRAFLQTLDNKKDLSNVNNYQAEEIAADMKAVCDTSIAINDFLFSLNIDNINLVKLLQYIKESNLVH KVSGYGEKVASLQEGLALNRNGEFGEEGSTLSSFRALVDMLMSLTNNDGDGRMIISKMRSTCSGLQGGFLKYVMLTGEKIFSEIVDEAHAVILAGGTLQP IEETRERLFPWLPPNQLHFFSCSHIVPPESILPIAVSRGPSGQSFDFSYSSRSSLVMIEELGLLLCNLVAFVPEGIVVFFSSFEYEGQVYDSWKKSGILE RIMRKKRIFREPRSNSDVELILKEYKETIDGLSSGTKEDGVRHNGAVLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSDMELMERVKYIESLGEPNC GKRPEISVGEHYYNGDVQTAFSILRSCRRRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDMRYASDSSKTSFSHPTNKLPLWIKDRLVSATNNYGE VHRLLHQFFKYNKKRECQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.018G138000 [exp]	2.00	0.7693	MET1.1
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	13.60	0.7901
AT1G60560			SWIM zinc finger family protei...		Potri.006G245800 [exp]	14.56	0.6912
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	17.54	0.7818
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.006G043232 [exp]	19.79	0.6888
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	20.00	0.6922
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	21.16	0.6840
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	21.16	0.7452	Pt-MSH2.1
AT2G26470			unknown protein		Potri.002G250400 [exp]	31.30	0.7550
					Potri.008G023250 [exp]	32.63	0.7229

Compare expression of checked genes

Potri.001G182600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.