Plant FIBer expression Database

Potri.001G182801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G182801.1 pacid=42790563 polypeptide=Potri.001G182801.1.p locus=Potri.001G182801 ID=Potri.001G182801.1.v4.1 annot-version=v4.1
ATGTATCAAGATCTAGAGACTATAAGGCAAACTGGTTTGATTCTTTTATCATTAGAATGCGTAATTCATACTTATTGGCGAGAAAGCCTTTCTCTTAGTT
TACTTGCAATATCTTGGATGTCAGAGAACATGCGATTGAATCTTATCCCTTTGGTCTGCCATGGTAACTGGTTTTCTACTGGGAATCAGCCCTTGGAAGT
TGGAGCCAAAAGCTTTGAGATGATGGCAAACCGGTCATGGTGTGAAAAGTTGAAAAAGCATATAGATTTCAGTGGCTGCAATTCTACTTTCGCTAGACAT
AGCAGGAACCTTGCCTGA
AA sequence
>Potri.001G182801.1 pacid=42790563 polypeptide=Potri.001G182801.1.p locus=Potri.001G182801 ID=Potri.001G182801.1.v4.1 annot-version=v4.1
MYQDLETIRQTGLILLSLECVIHTYWRESLSLSLLAISWMSENMRLNLIPLVCHGNWFSTGNQPLEVGAKSFEMMANRSWCEKLKKHIDFSGCNSTFARH
SRNLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G182801
[exp]
0 1
AT1G60890 Phosphatidylinositol-4-phospha... Potri.003G019100
[exp]
4.47 0.7990
AT5G45600 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLI... Potri.007G012700
[exp]
29.69 0.7787
AT4G16470 Tetratricopeptide repeat (TPR)... Potri.016G010100
[exp]
46.43 0.7288
AT5G56170 LLG1 LORELEI-LIKE-GPI-ANCHORED PROT... Potri.013G132000
[exp]
55.00 0.7530
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G224075
[exp]
56.92 0.7518
AT2G18170 ATMPK7 MAP kinase 7 (.1) Potri.005G119500
[exp]
57.59 0.7208 Pt-MPK7.1
AT3G07130 ATPAP15, PAP15 purple acid phosphatase 15 (.1... Potri.002G243900
[exp]
74.28 0.7254
AT4G19010 AMP-dependent synthetase and l... Potri.003G099700
[exp]
78.80 0.6991 Ptr4CL13
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
80.19 0.7540
AT4G38040 Exostosin family protein (.1) Potri.015G087900
[exp]
82.14 0.7050

Potri.001G182801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.