Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 560 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 552 / 0 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT2G18470 505 / 2e-173 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G24540 484 / 7e-167 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G34440 487 / 1e-165 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G49270 452 / 8e-152 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 443 / 4e-148 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G70460 437 / 1e-145 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 432 / 7e-144 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 429 / 4e-143 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053301 [exp] 830 / 0 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 582 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 493 / 3e-169 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 490 / 3e-167 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 480 / 3e-163 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 477 / 4e-162 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 447 / 3e-149 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 442 / 1e-147 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 435 / 1e-144 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 583 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 568 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 560 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 471 / 1e-160 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 460 / 2e-158 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10041734 [exp] 464 / 4e-158 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 450 / 1e-155 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 460 / 2e-155 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 444 / 2e-150 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 447 / 2e-149 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G183000.2 pacid=42791726 polypeptide=Potri.001G183000.2.p locus=Potri.001G183000 ID=Potri.001G183000.2.v4.1 annot-version=v4.1 ATGTCGTCTCCGTCTCCGGGAGGTTCTCCGGTCCCCTTCAACTCCACCCCTCCGCCTCCAGTATCTAACCTCACACCTCCGCCTCCGCCTGACACGACCA ACCAAACTGCTTCTCAGGCACCTCCACCGACGAACTCGAATGGTACTCTAACGCCGCCGTCATATCCAAGGGGATCTCCGGGACCGGCAGGGCCGTCCCC GCCGGTACTGTCGGCGTTGATAGTAGGAGTAGTGTTAGGTGTGCTGGCTGGTGTGGGTTTTTCTGTTTGTGTGTACAGGAGGAAGAAAAGGAAGGAAGCG CAGAGATTGTTGCTCGCTGGCCAACCTTCGCAAGTAGCTAGCAAAGATGATGATTGGCAGCACAATACTGCTCCCCCTCCGGACAATAAAATGATGACGT GGCCGAAGCTCACTCATCCGCAAGGAACTCCTCCGAGTAACCAAGTGCCACCAATGCCTGGTATTTTTGCTGAACATCCTTCGACAAGCAGCAGCATGGG CTCTGATAAGCAATTTCCACCACCAACTCCTGGAATTGCTCTTGGATATTCACAGAGCACTTTTACTTATGAAGAACTAGCCATGGCCACTGATAATTTC TCCGAAGCCAACCTCCTTGGTCAGGGTGGTTTTGGCTATGTTCACAAGGGAATCCTTGCTAATGGTACGGTGGTTGCAATTAAGCAGCTTAAATCTGGGA GTGGACAGGGGGAGCGTGAATTTCGGGCCGAGATTGAGATTATTAGCCGTGTCCATCATCGACATCTTGTTTCATTATTTGGTTACTGCATCGCTGGAGC CCAAAGAATGCTTGTTTATGAGTTTGTACCCAACTACACCTTGGAATTTCATTTACATGAGAATGGGAGACCAACCATGAACTGGTCAACAACAATGAAG ATTGCAGTTGGCGCTGCAAAAGGATTGGCATATCTGCATGAAGACTGCCAGCCTAAAATCATACATCGAGATATCAAGGCTTCTAATATTCTTATTGATC ATAGCTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCCAAACATTCTTTAGATACAGAAACTCATGTCTCAACTCGAGTGATGGGAACTTTTGGTTATAT GGCACCAGAGTATGCCTCCTCTGGGAAGCTTACAGCGAAGTCAGATGTCTATTCCTTTGGTGTTGTGCTTCTAGAGTTGATTAGTGGGCGTCGGCCTGTT GATAGAACTCAATCCTTTATTGATGATAGCATAGTTGATTGGGCAAGGCCTTTGCTCAAACAAGCTCTAGAAGATGGCAACTTTGATGCTGTTGTTGACC CAAAACTGCAGGACTATGATTCTAATGAAATGATCCGAATGATTTGTTGTGCTGCAGCTTGTGTACGTCATTTGGGACGGTTTCGGCCGCGAATGAGCCA GATAGTTCGAGCTCTGGAAGGAAATATGCCTCTTGGTGAACTGAATGAGGGGATCACTCCTGGGCCTAGCATGGTATACAGTTCTGCAAGCTCAGATTAT ACCAATCGCCAATACGAGGAGGACCTGAAGAAATTCAGAAAGTTAGCACTAGAAAGTCCTGAGCATGATAGCAGAGTGAACCCACTAGCAAGTACAAGCA GCCAAGAGTGCACTGAACCCACAAGCGAGTCTGGTCGGAATCCATTCCGCTCAAGCACAGAAGGCCAACAAACTAAACCAGAGATGGATTCACAAAGAAA GGAGGAAAACATCAAAGATACCTAG
AA sequence Show only first row Show all	>Potri.001G183000.2 pacid=42791726 polypeptide=Potri.001G183000.2.p locus=Potri.001G183000 ID=Potri.001G183000.2.v4.1 annot-version=v4.1 MSSPSPGGSPVPFNSTPPPPVSNLTPPPPPDTTNQTASQAPPPTNSNGTLTPPSYPRGSPGPAGPSPPVLSALIVGVVLGVLAGVGFSVCVYRRKKRKEA QRLLLAGQPSQVASKDDDWQHNTAPPPDNKMMTWPKLTHPQGTPPSNQVPPMPGIFAEHPSTSSSMGSDKQFPPPTPGIALGYSQSTFTYEELAMATDNF SEANLLGQGGFGYVHKGILANGTVVAIKQLKSGSGQGEREFRAEIEIISRVHHRHLVSLFGYCIAGAQRMLVYEFVPNYTLEFHLHENGRPTMNWSTTMK IAVGAAKGLAYLHEDCQPKIIHRDIKASNILIDHSFEAKVADFGLAKHSLDTETHVSTRVMGTFGYMAPEYASSGKLTAKSDVYSFGVVLLELISGRRPV DRTQSFIDDSIVDWARPLLKQALEDGNFDAVVDPKLQDYDSNEMIRMICCAAACVRHLGRFRPRMSQIVRALEGNMPLGELNEGITPGPSMVYSSASSDY TNRQYEEDLKKFRKLALESPEHDSRVNPLASTSSQECTEPTSESGRNPFRSSTEGQQTKPEMDSQRKEENIKDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.001G183000 [exp]	0	1
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	1.41	0.7633
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	12.88	0.7321
AT1G28050	CO	COL15	B-box type zinc finger protein...		Potri.003G166000 [exp]	14.56	0.6115
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	15.65	0.6748	ARL1.3
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Potri.002G195300 [exp]	15.68	0.6169
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	18.41	0.6888
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	21.90	0.6764
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	22.18	0.6649
					Potri.003G196200 [exp]	24.18	0.6542
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	24.49	0.6336

Compare expression of checked genes

Potri.001G183000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.