Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) AT2G15900 237 / 2e-64 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053200 [exp] 1819 / 0 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.004G146600 [exp] 254 / 6e-70 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.009G108300 [exp] 253 / 2e-69 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035877 [exp] 1194 / 0 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 1122 / 0 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10027939 [exp] 254 / 6e-70 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 206 / 3e-57 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 193 / 3e-54 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 191 / 2e-49 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10025786 [exp] 49 / 3e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain PF02194 [poplar] [flax] PXA PXA domain PF08628 [poplar] [flax] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Potri.001G183100.1 pacid=42791832 polypeptide=Potri.001G183100.1.p locus=Potri.001G183100 ID=Potri.001G183100.1.v4.1 annot-version=v4.1 ATGAGCACGCAAAGGCAGGTGATCGTACGGGACTTAATGGATGAAGGCAAGAAGAGGATTGTTGTTTTGGTTATTTGTGTTGTTGGATTATCTTATCTCA TGTCTTTAACGAGCTCCTCAGTTTGGGTCAACTTGCCTGCTGCTGCTTCCTTGATCATTCTCCTTCGCTACTTCACCATGGATTATGAAATGCGTAAGAA AGCTGCTGCATATAACAACAAACCTGCCTCTGCAAAATCAAGTACACTGCCACAAAACAAATCTCTTGAACTTACCAGGGTAGTTGAAAAGTCTGACTGG AGAAGGAAAGTGAATTCTCCTGTTGTTGAGGATGCAATAGATCACTTAACAAGACATCTAGTCTCTGAGTGGGTGGCAGATCTATGGTACTCTCGCCTGA CCCCTGATAAGGAAGGTCCAGAGGAACTGGTGCAGCTAATGAATGGTGTTCTTGGGGAATTTTCAAGTCGCATGAGAAATGTAAATCTTATTGATCTACT GACAAGGGATCTTATTAATCTCATCTGCACCCATTTGGAGCTTTTTCGTGCAAGTCAAGCAAAGATTGAAAAGCAACAGTCTGGTTTGATTACCATTGAT CAGCGAGACAAGGAACTAAGACTTGTTCTGCATGCTGAGAACAAATTGCACCCTGCTTTATTTTCTGCTGAAGCTGAGCACAAGGTTTTGCAGCATCTGA TGGATGGCCTCATTTCTTTCACTTTCAAGCCAGCAGATCTGCAGTGCTCTTTCTTCCGTTATGTTGTCAGGGAACTTCTCGCTTGTGCGGTGATGCGACC AGTGTTAAACTTGGCTAGCCCAAGGTTCATAAACGAAAGGATTGAAAATGTTATCATTTCTAAGGCTAATCAAAGAGTTGCTGCAGCACAAGAAGCATCT CATTCCAAACCAAATGGGTCTTCAAGGATCTCATCCGATCATTTTTCTAGGTTTTTAGACCCTACTGGAACTGGGGTTGAACTTACGCAGTTAAAAACCA ATCAATCCAGAAGTGGGCCAGAGGCACCTGAAAAAGATAAGGTGAATGGAAGCCATATCTCAAAAGATCCATTGCTTTCCATCGATACCCCATCTTCCCG CACATGGAGCTCACTGTCCAAAAACTCCCAGATTAATAATGAAGGAGAAATTGAACGACATCTTTCAGGACGTGAATGGGGTGAGATGTTTGATATGATG TCTCGCAGAAAGACTGCTGCCCTTGCTCCAGAAAATTTTGAAAACATGTGGACAAAAGGGAGAAACTATAGAAAGAAAGAAGGTGAAAATCAGTCGATCA AGCACGCCTCACAGAATTCTTCAGCAAGTAAGTCCAATACATCAGATTATTCAAAGAGTACGTCGAATTCCAAGAAGGATGATGTAACCAAACTCGATGC TTCGCTGGCCCACAATGATCAGTCTGTGGGTACTGAGCAGTCTACTGTAGAAAACCCTCTGCATCATGTCAATCAGAACATGTCAAATCCCTCACTATTT AGTTCACACCGAGATGGCATACAGAGCCTCATGCATGTGGATGGGACTGAATCAGGCAGCACTAGCTCTTATACTTCTGAAGAGGAAGATGTGAACTTTG TAACTGGTCTTGATTCTCCAGGAACTAAAGTCTGGGATGGTAAAACTAACAGAAACCAGGCTGTTTCCCACATTCATCATCCGCTTGAAAATCCTGATGG CCACAGGGCAAAGAAGACTGGTAGAGGGCATGCTCACTATCAAAGATTATCTAGACCCCAATCTGGCAGGAAAAGGTCGAGGCCAAGCACTCAGAAGGTA CCTGTTTGGCAAGAGATTGAGAGAACAAGCTTCTTGTCTGGGGATGGGCAGGACATACTTAGTTTAAAAGGACATGCTAAAGCTGATGATTTCACTGATG ATTCCGAGGTTGAAAGTCTGGATAGAGTTTACAGTGGATCAACTGCTTGTTCGTCTGCACCATCTGTTTCTATTCCTGAAAGCCACACTTTAAATGATAA TTCCTTGAAACATTCATTAATGGTGGACGCATTTTATAAGTTGAGATGTGAGGTATTGGGTGCAAATATTGTTAAGAGTGACTCTAAAACGTTTGCTGTT TATTCCTTATCTGTTACAGATGTAAATAACAATAGTTGGTCAATCAAAAGAAGGTTTCGACATTTTGAGGAGTTACATAGACGGCTCAAAGAATATCCGG AATATAGTCTTCATTTGCCGCCAAAGCATTTTCTCTCTACAGGTTTAGATATGCCTGTCATAAAAGAGCGGTGTAAATTGCTTGACAGATATCTGAAGAG GCTCTTGCAACTTCCAACAATTTCAGGATCTATTGAAGTCTGGGACTTTCTTAGCGTTGATTCTCAGACGTATGTGTTCTCAAATTCATTTTCTATCATC GAAACATTATCAGGTGACCTGGATGATAAGCCCTCTGAAAAGAGTAAAAGGGTTTCAAATTTTATCGGGCCTGCAACCGATTCCTTATCCACTAGGAATA AGATTAAAACGGAACAATTGAGTGCAGAGTGCAAGGAATCTATATTGCAGACAAAGCATGCTCTTGGGGTAGATGGAGCACGAATGATTTCAAAAGACAC ACCTCAATCTCCAGAGAGAAAGTCTGTCAAAGAATTTGGAAAATCATTCAAGGATCCAGGCTGTGATTCAGATACGCAAAAGAATGCATCATCTGCCAGA AATTTAGAGAAGAATATAAAAGGAAGAGAGGGCGATAGTTTAGAAGAGATGTCCGCATCCCTTAATGATTCTGCTAATGACCCCATGCTCCCTACAGAGT GGGCACCACCAAATTTGACTGTTCCTATACTTGATTTGATAGATGTCATTTTCCAGCTACAAGATGGTGGATGGATCAGGAGGCAGGCTTTTTGGGTGGC CAAACAGATACTACAACTAGGAATGGGTGATGCTTTAGATGATTGGTTGATAGAGAAAATCCAGCTTCTGCGTAGGGGTTCAGTTGTTGCATCGGGGATC AAGCGGGTTGAGCAGATACTTTGGCCTGATGGAATATTCATAACCAAACATCCAAAGAGACGACCGCCACCCCATCAACCCTCAGAAGTGTCTTCTCCTA AATTCATTTCCCCTCATGGCCAGCAACCCATGGAAGTATCTTCACCTAAATTTAGTAATGAGCAGCAACAACAGGATGCAGCTCGACGTGCTAAACTTGT ATATGAGCTGATGATTGACAATGCACCAGCTGCCATTGTAAGTCTTGTTGGTCGAAAGGAGTATGAACAATGTGCAAAAGATCTCTATTTCTTTCTTCAG TCATCTGTTTGTATGAAACAACTGGCGTTTGACCTCCTTGAGCTGCTGCTTTTGACTGCATTTCCAGAACTGGATTATGTTTTCAGGCAGCTGCATGAAG AAAAGCATAAATTTGGTGAATTTAAACCCAATTAA
AA sequence Show only first row Show all	>Potri.001G183100.1 pacid=42791832 polypeptide=Potri.001G183100.1.p locus=Potri.001G183100 ID=Potri.001G183100.1.v4.1 annot-version=v4.1 MSTQRQVIVRDLMDEGKKRIVVLVICVVGLSYLMSLTSSSVWVNLPAAASLIILLRYFTMDYEMRKKAAAYNNKPASAKSSTLPQNKSLELTRVVEKSDW RRKVNSPVVEDAIDHLTRHLVSEWVADLWYSRLTPDKEGPEELVQLMNGVLGEFSSRMRNVNLIDLLTRDLINLICTHLELFRASQAKIEKQQSGLITID QRDKELRLVLHAENKLHPALFSAEAEHKVLQHLMDGLISFTFKPADLQCSFFRYVVRELLACAVMRPVLNLASPRFINERIENVIISKANQRVAAAQEAS HSKPNGSSRISSDHFSRFLDPTGTGVELTQLKTNQSRSGPEAPEKDKVNGSHISKDPLLSIDTPSSRTWSSLSKNSQINNEGEIERHLSGREWGEMFDMM SRRKTAALAPENFENMWTKGRNYRKKEGENQSIKHASQNSSASKSNTSDYSKSTSNSKKDDVTKLDASLAHNDQSVGTEQSTVENPLHHVNQNMSNPSLF SSHRDGIQSLMHVDGTESGSTSSYTSEEEDVNFVTGLDSPGTKVWDGKTNRNQAVSHIHHPLENPDGHRAKKTGRGHAHYQRLSRPQSGRKRSRPSTQKV PVWQEIERTSFLSGDGQDILSLKGHAKADDFTDDSEVESLDRVYSGSTACSSAPSVSIPESHTLNDNSLKHSLMVDAFYKLRCEVLGANIVKSDSKTFAV YSLSVTDVNNNSWSIKRRFRHFEELHRRLKEYPEYSLHLPPKHFLSTGLDMPVIKERCKLLDRYLKRLLQLPTISGSIEVWDFLSVDSQTYVFSNSFSII ETLSGDLDDKPSEKSKRVSNFIGPATDSLSTRNKIKTEQLSAECKESILQTKHALGVDGARMISKDTPQSPERKSVKEFGKSFKDPGCDSDTQKNASSAR NLEKNIKGREGDSLEEMSASLNDSANDPMLPTEWAPPNLTVPILDLIDVIFQLQDGGWIRRQAFWVAKQILQLGMGDALDDWLIEKIQLLRRGSVVASGI KRVEQILWPDGIFITKHPKRRPPPHQPSEVSSPKFISPHGQQPMEVSSPKFSNEQQQQDAARRAKLVYELMIDNAPAAIVSLVGRKEYEQCAKDLYFFLQ SSVCMKQLAFDLLELLLLTAFPELDYVFRQLHEEKHKFGEFKPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	1.00	0.8846
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	2.44	0.8322
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	3.00	0.7506
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	5.74	0.7778	SEC5.1
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	7.74	0.7728
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	8.83	0.7693
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	10.67	0.7008
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	11.74	0.6749
AT4G01290			unknown protein		Potri.014G089200 [exp]	17.54	0.7162
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.016G114600 [exp]	17.88	0.6789

Compare expression of checked genes

Potri.001G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.