Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) AT2G36630 299 / 8e-97 Sulfite exporter TauE/SafE family protein (.1) AT1G61740 89 / 9e-19 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 84 / 3e-17 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 82 / 9e-17 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 69 / 2e-12 Sulfite exporter TauE/SafE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183400 [exp] 552 / 0 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 446 / 5e-154 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1) Potri.003G053000 [exp] 445 / 2e-153 AT2G25737 501 / 2e-175 Sulfite exporter TauE/SafE family protein (.1) Potri.006G242100 [exp] 393 / 4e-133 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 393 / 5e-133 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.005G124200 [exp] 387 / 1e-130 AT2G25737 453 / 1e-156 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 384 / 1e-129 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.007G026800 [exp] 381 / 2e-128 AT2G25737 434 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) Potri.006G117900 [exp] 292 / 5e-94 AT2G36630 578 / 0.0 Sulfite exporter TauE/SafE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011682 [exp] 395 / 6e-134 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10014316 [exp] 373 / 5e-125 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10026025 [exp] 373 / 7e-125 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 280 / 2e-89 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 272 / 3e-86 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10029813 [exp] 271 / 1e-85 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10022133 [exp] 86 / 3e-20 AT2G25737 106 / 2e-28 Sulfite exporter TauE/SafE family protein (.1) Lus10022134 [exp] 75 / 3e-15 AT2G25737 168 / 8e-50 Sulfite exporter TauE/SafE family protein (.1) Lus10020068 [exp] 77 / 6e-15 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01925 [poplar] [flax] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Potri.001G183300.2 pacid=42789681 polypeptide=Potri.001G183300.2.p locus=Potri.001G183300 ID=Potri.001G183300.2.v4.1 annot-version=v4.1 ATGATGGCTGGAGTTGGATCAAAATGGTGGTACGGCACTTCATCTTCAAGACTAAGAGGGAAAATCTTGATTGGTTTGATTGTTGCAATTTCAACATTGA CGATGGCTGTAGCAGAGCCAAGTTTGAAACTGAAAGATTCATTTTATAATGGGACTCAAAAGGTTGAGCCTCATCATGGAACAACAAGCCAGTCGGGTTA CAAACATGTTTGGCCTGATATGAAATTTGGTTGGAAAACTGTGGTGGGTACTATAATTACGTTCTTGGGAGCAGCATGTGGGAGTGTAGGAGGTGTTGGT GGAGGTGGCATTTTTGTACCGATGCTTACCCTCATTGTTGGGTTTGATTCCAAATCATCAGCAGCGATATCAAAATGTATGATCACAGGTGCAGCAGCAT CGACTGTTCTTTATAATATAAGATTAAGACATCCTACGCTGGAACTGCCTATCATCGACTACGATCTGGCACTTCTATTTCAGCCAATGTTGATTCTGGG AATTAGCATAGGAGTCACCCTGAATGTGCTCTTTAGTGATTGGATGATCACGATTTTGCTAATCATTATCTTCGGCGCAACATCAGCCAAGGCATTCTTC AAAGGTGTTGAAACATGGAAGAAAGAAACCAAATCAAAACAGGAAGCTGCTAGTGTACAGTTGGATAACTCTGACTACGAAATTGAAGCAGCGGAGGAAA ATGCCCCTCCTGGAGGCACCACCAGTCAATATCAAATAAAATCCGAGTCCAAAAAAGAAATGGTCTCAATTACAGAGAATGTTTATTGGAAGGAACTTGG AATTCTTGTTGCTGTCTGGCTGATCATCCTTGCGTTGCAGATTGGCAAGAATTACTCAACCACCTGCTCAGTTGAATATTGGTTATTGAACACAATGCAG ATCCCGGTGGCAGTCGGTGTAACTTCATATGTGGCCGTTAGCCTGTACAAAGGGCGGAGAAAGATTGCATCCAAGGGAGAAGCAAGAAATAACTGGCCTT TGCACAGACTTTTCTTTTATTGTGTCACAGCTCTTATGGCTGGCACAGTTGGAGGCATGCTTGGACTTGGTGGAGGATTCATTTTGGGTCCTCTTTTTTT GGAGATGGGAATCCCTCCACAGGTGTCAAGTGCCACTGCCGCCTTTGCCATGATGTTTTCTGCATCAATATCTGTTGTAGAATTTTACCTTCTGAAACGT TTCCCCGTTCCTTACGCTCTCTACTTCTTCGTCGTGGCTACCATTTCTGCCGTGGTTGGGCAGCATGTAGCAGGAAAGCTGATCAGAATATTAGGGAGAG CATCTCTAATCATCTTCACTCTAGCCTTTATAATATTTGCGAGTGCAATATTATTAGGTGGGGTTGGCATCGGACGCTCGATAAAACAGATTGAGAGGAA TGAATACATGGGATTTGAAAACATTTGCTCATAG
AA sequence Show only first row Show all	>Potri.001G183300.2 pacid=42789681 polypeptide=Potri.001G183300.2.p locus=Potri.001G183300 ID=Potri.001G183300.2.v4.1 annot-version=v4.1 MMAGVGSKWWYGTSSSRLRGKILIGLIVAISTLTMAVAEPSLKLKDSFYNGTQKVEPHHGTTSQSGYKHVWPDMKFGWKTVVGTIITFLGAACGSVGGVG GGGIFVPMLTLIVGFDSKSSAAISKCMITGAAASTVLYNIRLRHPTLELPIIDYDLALLFQPMLILGISIGVTLNVLFSDWMITILLIIIFGATSAKAFF KGVETWKKETKSKQEAASVQLDNSDYEIEAAEENAPPGGTTSQYQIKSESKKEMVSITENVYWKELGILVAVWLIILALQIGKNYSTTCSVEYWLLNTMQ IPVAVGVTSYVAVSLYKGRRKIASKGEARNNWPLHRLFFYCVTALMAGTVGGMLGLGGGFILGPLFLEMGIPPQVSSATAAFAMMFSASISVVEFYLLKR FPVPYALYFFVVATISAVVGQHVAGKLIRILGRASLIIFTLAFIIFASAILLGGVGIGRSIKQIERNEYMGFENICS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183300 [exp]	0	1
AT1G07050			CCT motif family protein (.1)		Potri.009G077100 [exp]	4.58	0.8210
					Potri.018G064450 [exp]	28.46	0.6319
AT4G33230			Plant invertase/pectin methyle...		Potri.001G209000 [exp]	34.98	0.6565
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.012G133800 [exp]	42.66	0.5432	Pt-ARR13.1,PtRR17
AT2G04039			unknown protein		Potri.002G217400 [exp]	68.73	0.7464
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137950 [exp]	110.47	0.5617
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G274600 [exp]	151.77	0.5828	F3'5'H2
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Potri.010G218001 [exp]	180.82	0.4945

Compare expression of checked genes

Potri.001G183300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.