Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 404 / 2e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 267 / 3e-88 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 230 / 9e-74 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G17745 104 / 8e-25 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 98 / 2e-22 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 96 / 9e-22 D-3-phosphoglycerate dehydrogenase (.1) AT1G68010 91 / 2e-20 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G14780 87 / 3e-19 FDH formate dehydrogenase (.1) AT1G72190 86 / 1e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G01510 51 / 7e-07 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052700 [exp] 411 / 4e-145 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 276 / 5e-94 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 272 / 4e-90 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 264 / 2e-86 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 253 / 1e-82 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 251 / 1e-81 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 240 / 1e-77 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 238 / 2e-76 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G122700 [exp] 102 / 3e-24 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025795 [exp] 452 / 4e-161 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 449 / 4e-160 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 410 / 9e-145 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 409 / 2e-144 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 402 / 2e-141 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 249 / 5e-81 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 240 / 1e-77 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 239 / 2e-77 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 223 / 3e-71 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10011442 [exp] 127 / 6e-36 AT1G79870 117 / 1e-32 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G183700.1 pacid=42791246 polypeptide=Potri.001G183700.1.p locus=Potri.001G183700 ID=Potri.001G183700.1.v4.1 annot-version=v4.1 ATGAAGTCCATTGGAGTCCTAATGACTTGTCCGATGCACAAATACCTAGAACAACAGCTAGAAACCCACTTCAATCTCTTCAAACTATGGCACTGCAACT CCTCAATAACTGAATTCTTGAAAACCCATCAAGGAAACACAATCAGAGCAGTAGTGGGTAACACTGAGATTGGTGCAGATGTGGAACTAATTGCGTCATT GCCAAGTTTGGAAATTGTTGCCAGTTACAGTGTAGGATTGGATAAAATTGATTTGAGAAAGTGTGAAGAGAAAGGGATTAGAGTTGCTAATACCCCTGAT GTTTTGACTGATGATGTTGCTGACTTAGCAATTGGGTTGATATTGGGGGTTTTGAGGGGGATTTGTGCTTCTGATGCTTACGTCAGGATTGGCAAGTGGA AGGATGCTGATTTTGGATTGGCAACAAAGTTTAGTGGTAAATCAGTTGGCATCGTTGGGTTGGGCAGAATTGGTACAGCTATTGCGAAGAGAGCTGAAGC TTTTGGTTGCTCCATAAGTTACTTCTCCAGGTCACAAAAACCATTTGCAAACTACAAATTCTACTCGAACATTATTGACTTGGCCACCAGTTGCCAAATC CTCATCGTGGCTTGTGCTTTGACAGAGGAAACCCGCCATATTATCAATCGCGAAGTCATTGATGCTCTGGGTCCAAAGGGCATTCTAATAAACATTGGAC GGGGTGCTCACGTGGATGAAACTGAGCTTGTGTCTGCATTGCTTGAAGGTCGGCTAGGTGGCGCAGGGCTTGATGTGTATGAAAATGAGCCTGATGTACC TGAAGAATTGCTCGGTCTTGGCAATGTTGTCCTCCAGCCTCATGTGGGATCTGACACTGTAGAAACCAGCGACGCAATGGCAGACCTTGTCATTTCAAAC TTGAAGGCACACTTTAGCAAAAAGTCCCTGTTGACTCCAGTTATATGA
AA sequence Show only first row Show all	>Potri.001G183700.1 pacid=42791246 polypeptide=Potri.001G183700.1.p locus=Potri.001G183700 ID=Potri.001G183700.1.v4.1 annot-version=v4.1 MKSIGVLMTCPMHKYLEQQLETHFNLFKLWHCNSSITEFLKTHQGNTIRAVVGNTEIGADVELIASLPSLEIVASYSVGLDKIDLRKCEEKGIRVANTPD VLTDDVADLAIGLILGVLRGICASDAYVRIGKWKDADFGLATKFSGKSVGIVGLGRIGTAIAKRAEAFGCSISYFSRSQKPFANYKFYSNIIDLATSCQI LIVACALTEETRHIINREVIDALGPKGILINIGRGAHVDETELVSALLEGRLGGAGLDVYENEPDVPEELLGLGNVVLQPHVGSDTVETSDAMADLVISN LKAHFSKKSLLTPVI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.001G183700 [exp]	0	1
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	3.46	0.7144
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	4.24	0.7054
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	6.70	0.6746
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	20.78	0.6081
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.017G119500 [exp]	22.49	0.5908
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	23.04	0.6145
AT1G34220			Regulator of Vps4 activity in ...		Potri.019G087400 [exp]	30.98	0.4982
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G027100 [exp]	38.34	0.6382	AHP1.1
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	46.58	0.6017	TSA1.1
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	49.30	0.6091

Compare expression of checked genes

Potri.001G183700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.