Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79860 637 / 0 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 615 / 0 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT4G13240 581 / 0 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G24620 577 / 0 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT3G16130 532 / 0 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT5G19560 518 / 0 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT5G02010 405 / 1e-135 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 396 / 3e-132 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 387 / 1e-127 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G00460 368 / 2e-122 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052600 [exp] 970 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.018G082400 [exp] 625 / 0 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Potri.006G092600 [exp] 410 / 9e-137 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 410 / 2e-135 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.009G140100 [exp] 404 / 4e-135 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 403 / 2e-134 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G159700 [exp] 385 / 1e-128 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 384 / 1e-128 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G014100 [exp] 387 / 2e-128 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025797 [exp] 658 / 0 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10035865 [exp] 655 / 0 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10038560 [exp] 620 / 0 AT1G79860 565 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10037866 [exp] 617 / 0 AT1G79860 591 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10034927 [exp] 570 / 0 AT3G24620 564 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Lus10040248 [exp] 393 / 5e-130 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 390 / 2e-129 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 390 / 6e-129 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 392 / 2e-128 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 390 / 9e-128 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.001G183800.2 pacid=42790348 polypeptide=Potri.001G183800.2.p locus=Potri.001G183800 ID=Potri.001G183800.2.v4.1 annot-version=v4.1 ATGGTTCGTGCTCTCAGAGAAGAACAAGAAGAAGACTATAGGTCTAGATTGTATCATTTCAAAGGGATGAATGAGAATGCCGGGGGTCAGCATGTTAAGA GCTTGAGCGCGGATGATAGTTCTAGTTTTGAAGAATACTCTTCAATGGAGGACAGAATGACATGTAGAAACCATCAGGCTCCAAGACGCTTAAATGACCA AGCATCAGATCATAAACAGAAAGTGGGAACTTCACCTTATAGGAATGATAAGGGCCCTAGATCAAGGATAGGAAAGGATGAAGCCGGGGTTGCTCCTTCA GGAAAAGATAATAAAAATCTAGAAATGGAACAGATGAAGGAAAGGTTTGCTAAACTGCTTCTTGGGGAGGATATGTCTGGCGGAGGAAAGGGTGTCTCCT CAGCTTTGGCATTGTCAAATGCAATTACAAATCTTGCTGCTTCTGTGTTTGGCGAACAACGGCGTCTAGAGCCTATGTCACCAGAAAGAAAAGCAAGGTG GATAAGAGAAATTGATTGGCTCTTATCTGTAACCGATCACATTGTTGAACTTGTTCCTTCCCAACAAAAATCCAAGGATGGATCAAGTATGGAGATAATG GTGACAAGACAACGAAATGATATTCATATGAACATCCCAGCCTTACGCAAGCTTGACGCAATGCTTCTTGACTCCCTAGATAACTTCAAAGACCAAAATG AGTTTTATTATGTTTCAAGAGACTCCCCCGAGTCAGAAAAAGGAGGCACCAAGAGAACAGATGATAAGTGGTGGCTACCTACTGTCAAAGTTCCTCCAGA TGGTTTATCGGAAAGGGCCACAAAATTTATTCAATACCAAAAAGACAGTGTGAACCAAGTTCTCAAAGCAGCCATGGCGATAAATGCTCAAATACTTTCA GAAATGGAGATTCCTGAAAACTACATTGAATCCCTTCCCAAAAACGGGAGGGCAAGCCTTGGAGACTTGGCGTACAGGAGCATTACTCTTGAGTACTTTG ATCCTGATCAATTTCTGAGCACCATGGACATATCATCAGAACATAAGATACTAGACCTCAAGAACAGAATAGAGGCTTCAATAGTGATTTGGAAAAGGAA GATGAATCAGAAAGATAGTAAATCCGCATGGGGATCTGCTGTCAGTTTGGAGAAGAGAGAACTCTTTGAAGAGAGGGCAGAAACTATCCTCCTCCTTCTC AAACAGCGCTTCCCTGGAATTCCTCAATCTTCACTAGATGTCAGCAAAATTCAATACAACAAGGATGTGGGGCACGCCATCTTGGAAAGCTATTCGAGAA TTCTAGAAACCTTGGCCTCGACAGTCTTGTCTCGAATCGAAGATGTACTCGATGCTGATTATGTTACTCGAAATCCATCACATGCAGGACATAAGAGGAA CACGTTAAAAGAGGCACCACAGGTACCGGCATCGCCCAGAGAAGGGATGGAGAAGAACTCCGAAGATACAAATGCTTCGATGACTCTGTCTGATTTTATG GGTTGGGGTTCAGAACAAAATGAGAGTGCGGCAAAGAAGGATCCATTTGGATCAGATGAACTACTGAAAGATGATGATAGATATAAACAGAAACTCACTA ACATATCAACCAACAGGAAACCTTCCTATCTTGATAATTTAGGAGCTTTACGAAGCCCAACAGCTCGCCATTAA
AA sequence Show only first row Show all	>Potri.001G183800.2 pacid=42790348 polypeptide=Potri.001G183800.2.p locus=Potri.001G183800 ID=Potri.001G183800.2.v4.1 annot-version=v4.1 MVRALREEQEEDYRSRLYHFKGMNENAGGQHVKSLSADDSSSFEEYSSMEDRMTCRNHQAPRRLNDQASDHKQKVGTSPYRNDKGPRSRIGKDEAGVAPS GKDNKNLEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMSPERKARWIREIDWLLSVTDHIVELVPSQQKSKDGSSMEIM VTRQRNDIHMNIPALRKLDAMLLDSLDNFKDQNEFYYVSRDSPESEKGGTKRTDDKWWLPTVKVPPDGLSERATKFIQYQKDSVNQVLKAAMAINAQILS EMEIPENYIESLPKNGRASLGDLAYRSITLEYFDPDQFLSTMDISSEHKILDLKNRIEASIVIWKRKMNQKDSKSAWGSAVSLEKRELFEERAETILLLL KQRFPGIPQSSLDVSKIQYNKDVGHAILESYSRILETLASTVLSRIEDVLDADYVTRNPSHAGHKRNTLKEAPQVPASPREGMEKNSEDTNASMTLSDFM GWGSEQNESAAKKDPFGSDELLKDDDRYKQKLTNISTNRKPSYLDNLGALRSPTARH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G183800 [exp]	0	1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	1.00	0.8678
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.001G295700 [exp]	4.47	0.8414
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	8.30	0.7862
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	10.95	0.7880	Pt-SKOR.2
AT5G49960			unknown protein		Potri.004G223400 [exp]	19.74	0.8161
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.010G145600 [exp]	22.89	0.8168
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	24.89	0.8048
AT4G16447			unknown protein		Potri.014G165000 [exp]	25.49	0.7252
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G135000 [exp]	25.92	0.7636
AT4G30993			Calcineurin-like metallo-phosp...		Potri.018G110300 [exp]	30.24	0.7927

Compare expression of checked genes

Potri.001G183800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.