Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79850 139 / 7e-43 PDE347, CS17, PRPS17, ORE4, RPS17 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) AT1G49400 43 / 7e-06 EMB1129 embryo defective 1129, Nucleic acid-binding, OB-fold-like protein (.1) AT3G18880 41 / 3e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080200 [exp] 50 / 9e-09 AT3G18880 155 / 1e-50 Nucleic acid-binding, OB-fold-like protein (.1) Potri.018G150100 [exp] 48 / 1e-07 AT1G49400 152 / 4e-49 embryo defective 1129, Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035863 [exp] 107 / 5e-30 AT1G79850 131 / 6e-40 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) Lus10025799 [exp] 106 / 6e-30 AT1G79850 133 / 9e-41 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) Lus10017467 [exp] 46 / 7e-07 AT3G18880 154 / 2e-50 Nucleic acid-binding, OB-fold-like protein (.1) Lus10028815 [exp] 45 / 1e-06 AT3G18880 154 / 4e-50 Nucleic acid-binding, OB-fold-like protein (.1) Lus10017993 [exp] 45 / 2e-06 AT3G18880 159 / 3e-52 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00366 [poplar] [flax] Ribosomal_S17 Ribosomal protein S17
Representative CDS sequence Show only first row Show all	>Potri.001G184000.5 pacid=42792811 polypeptide=Potri.001G184000.5.p locus=Potri.001G184000 ID=Potri.001G184000.5.v4.1 annot-version=v4.1 ATGCTGCTAACAATGTCCCTCACATCCTCACTCAACTCCCTTACTCTCTCCACTCCATTCCTCCATGGAACAACCCAACTTTCTCACTTGTCAAAACCCA CTTCTTCTCTCACTCTCCGACCCGCGAAGCCCTTCACTTTCCTCCCTCCAATCAGGGCCATGAAGTCATTGCAAGGCAAAGTTGTATGTGCAACAAGTGA CAAAACTGTGGCTGTTGAGGTTACAAGGTTGGCCCCACATCCTAAGTACAAGAGACGGGTGAGGAAGAAGAAGAAGTACCAGGCTCATGACCCTGAGAAT CAGTTCAAAGTTGGAGACTTGGTCCAGCTTGAAAAGAGCAGACCCATTAGCAAGACTAAAAGTTTTCTTGCTGTGCCTGTACCAGCTAGGAAGAAGAAGG AGAAGAAAGAGGGTGAGGAGGGAGGAGTGGGGTCTCAAGAGCTTGGAATTCCATTGGAGTCTCAACAGGAACTGCAGGCTTAA
AA sequence Show only first row Show all	>Potri.001G184000.5 pacid=42792811 polypeptide=Potri.001G184000.5.p locus=Potri.001G184000 ID=Potri.001G184000.5.v4.1 annot-version=v4.1 MLLTMSLTSSLNSLTLSTPFLHGTTQLSHLSKPTSSLTLRPAKPFTFLPPIRAMKSLQGKVVCATSDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPEN QFKVGDLVQLEKSRPISKTKSFLAVPVPARKKKEKKEGEEGGVGSQELGIPLESQQELQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	0	1
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	1.41	0.9899
AT4G13220			unknown protein		Potri.002G251800 [exp]	2.64	0.9854
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	3.16	0.9881
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.008G045800 [exp]	3.46	0.9868
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.014G153000 [exp]	3.87	0.9873
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	3.87	0.9876	Pt-RPL12.6
AT5G20935			unknown protein		Potri.009G155300 [exp]	4.47	0.9875
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	5.65	0.9854
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	7.93	0.9756
AT1G14345			NAD(P)-linked oxidoreductase s...		Potri.010G093300 [exp]	9.94	0.9809

Compare expression of checked genes

Potri.001G184000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.