Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GL2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79840 947 / 0 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G00730 614 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 602 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 598 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 596 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 588 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT5G52170 502 / 1e-168 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G73360 488 / 8e-163 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 479 / 6e-160 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 466 / 3e-154 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052400 [exp] 1342 / 0 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.014G075200 [exp] 669 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 660 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 618 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 618 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 610 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 609 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.012G139300 [exp] 577 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 564 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037554 [exp] 962 / 0 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10011440 [exp] 936 / 0 AT1G79840 827 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10006765 [exp] 617 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 611 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 606 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10039667 [exp] 603 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 599 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10036567 [exp] 565 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031321 [exp] 558 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10005759 [exp] 495 / 4e-165 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.001G184100.3 pacid=42792008 polypeptide=Potri.001G184100.3.p locus=Potri.001G184100 ID=Potri.001G184100.3.v4.1 annot-version=v4.1 ATGGGAGTCGACATGTCTAATCCACCCAATTCTCATATCAAGGACTTCTTTGCCTCGCCTGCTCTTTCTCTTAGTCTTGCTGGAATATTCCGGGGAGCAA ATGTGTGTAATGGGGAAGCAGCGGCAAGCATGGAGGTGGAGGAGGGGGAGGAAGGAAGTGGAGGAGGAAGAAGGGAAGAAACAGTGGAAATTAGCAGTGA GAACTCAGGGCCTATGAGATCAAAATCAGATGATGATTTTGAAGGTGAAGGAGAGCATGATCATGAGGATGATGATGATGGTGATGACAAAAACAAGAAG AAAAAAAGAAAGAAATACCACAGACATACCGCTGAGCAAATCAGAGAAATGGAAGCGCTATTTAAGGAGTCTCCTCATCCAGATGAGAAGCAAAGGCAGC AGTTAAGCAAGCAACTTGGCCTTGCTCCTAGACAAGTCAAGTTTTGGTTCCAAAATCGCCGTACTCAAATCAAGGCTATACAAGAGCGCCATGAAAACTC TCTATTGAAATCTGAAATGGATAAACTCCGGGAAGACAACAAGAGCATGAGGGAGACCATCAACAAAGCTTGCTGCCCAAATTGTGGTACCGCTACCACT AGTAGAGACGCTGCCTTGACAAGCACTGAGGAACAACAGTTACGTATCGAAAATGCAAAGCTCAAAGCCGAGGTAGAAAAACTTCGAGCGGTCGTGGGAA AAAGTAGTCCAGGGGCAACAGCATCATGCTCAGCTGGAAACGAGCAAGAAAACAGAAGTTCACTCGATTTTTACACTGGGATTTTCGGACTTGACAAGTC TAGAATCATGGAGACTGCTAATCAAGCAATGGAAGAGCTCAAGAAAATGGCTACGGCAGGCGAACCACTTTGGATTCGAAGTGTTGAGACAGGTCGTGAA ATTCTCAATTACGACGAGTACACAAAAGTGTTTGGTTCTGAAGATTCAAGCATTAATGGAAGGCCAAAGAGATCCATTGAGGCTTCAAGGGAGACCGGGG TTGTGTTCATTGATGTCCCAAGGCTAGTTCAAAGTTTTATGGATGTGGATCAGTGGAAGGAAATGTTTCCATGCTTAATTTCAAAGGCAGCCACTGTTGA TGTTATCTGCAATGGTGAAGGAGCAAGTAGAAATGGTGCAGTGCAATTGATGTTTGCTGAGGTCCAGATGCTTACACCCATGGTGCCCACCAGAGAAGTT TATTTTGTGAGATATTGCAAGCAACTTAATGCAGAACAATGGGCCATTGTTGATGTTTCTATTGACAAAGTTGAAGACAATATTGATGCTTCACTCGTCA AATGCAGAAAACGCCCCTCTGGTTGCATCATTGAGGATAAATCAAATGGCCATTGCAAGGTGATCTGGGTAGAACACCTGCAATGCCAGAAAAGCACAGT TCATACCATGTACCGGACAGTAGTTCATAGCGGTCTAACCTTTGGAGCAAGGCATTGGATGGCAACATTGCAACTCCAATGTGAGCGGCTTGTTTTCTTC ATGGCAACCAATGTTCCCACCAAGGATTCAACTGGTGTTGCTACTCTAGCTGGAAGGAAAAGCATTCTGAAACTGGCACAAAGAATGACATGGAGCTTTT GTCGAGCGATCTGCGCATCAAGCTATCACACATGGAACAAGGTCTCAAGCAAAACAGGAGAAGACATAAGGGTTTCCTCTAGGAAAAACTTAAATGACCC TGGTGAACCTGTTGGAGTGATTTTGTGTGCAGTTTCTTCTGTATGGTTGCCTGTCGTTCCTCATATTCTGTTTGATTTCTTAAGAGACGAAGCTCGTAGA AATGAGTGGGATATCATGTCAAATGGAGGACCTGTGCAAACCATTGCAAACTTGATCAAAGGGCAAGATAGAGGCAATGCAGCAGCTATTCTAAAGATGA AATCGAAAGAGAACAATATGTGGGTACTCCAAGATAGCTGCACAAATGCTTATGAATCCATGATAGTGTATGCTCCAGTGGACACTAATGGAATGCAATC TGTGATTACTGGATGTGATTCAAGCAACCTAGCAATATTACCTTCAGGATTCTCAATTCTTCCAGATGGACACGAATCAAGACCATTAGTGATCACTTCT AGGCAAGAGGAGAGGAGCACAGAAGGAGGATGTTTGCTAACAATAGCATTCCAAATCCTAACGAATACCTCTCCCACAGCCAAACCAACCATGGAATCTG TGGATTCTATTAATACACTTATATCATGCACATTGAAAAATATCAAGACAAGCTTGCAATGTGAAGATAGTTGA
AA sequence Show only first row Show all	>Potri.001G184100.3 pacid=42792008 polypeptide=Potri.001G184100.3.p locus=Potri.001G184100 ID=Potri.001G184100.3.v4.1 annot-version=v4.1 MGVDMSNPPNSHIKDFFASPALSLSLAGIFRGANVCNGEAAASMEVEEGEEGSGGGRREETVEISSENSGPMRSKSDDDFEGEGEHDHEDDDDGDDKNKK KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEMDKLREDNKSMRETINKACCPNCGTATT SRDAALTSTEEQQLRIENAKLKAEVEKLRAVVGKSSPGATASCSAGNEQENRSSLDFYTGIFGLDKSRIMETANQAMEELKKMATAGEPLWIRSVETGRE ILNYDEYTKVFGSEDSSINGRPKRSIEASRETGVVFIDVPRLVQSFMDVDQWKEMFPCLISKAATVDVICNGEGASRNGAVQLMFAEVQMLTPMVPTREV YFVRYCKQLNAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLQCQKSTVHTMYRTVVHSGLTFGARHWMATLQLQCERLVFF MATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCRAICASSYHTWNKVSSKTGEDIRVSSRKNLNDPGEPVGVILCAVSSVWLPVVPHILFDFLRDEARR NEWDIMSNGGPVQTIANLIKGQDRGNAAAILKMKSKENNMWVLQDSCTNAYESMIVYAPVDTNGMQSVITGCDSSNLAILPSGFSILPDGHESRPLVITS RQEERSTEGGCLLTIAFQILTNTSPTAKPTMESVDSINTLISCTLKNIKTSLQCEDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	0	1	GL2.2
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	1.00	0.9324
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	3.87	0.9000
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	4.47	0.8793	NPR1.1
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	5.74	0.8603	GL2.1
AT5G08240			unknown protein		Potri.007G071900 [exp]	6.00	0.8695
AT3G49055			unknown protein		Potri.015G146100 [exp]	8.00	0.8861
					Potri.010G253001 [exp]	8.94	0.8626
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	9.21	0.8332
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.001G168700 [exp]	10.19	0.8448
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.011G070100 [exp]	11.53	0.8690	WRKY65.2

Compare expression of checked genes

Potri.001G184100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.