Plant FIBer expression Database

Potri.001G184700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G52220 160 / 2e-51 unknown protein
AT2G46820 93 / 1e-24 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
AT4G01150 72 / 2e-16 unknown protein
AT4G38100 59 / 3e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G052200
[exp]
157 / 5e-50 AT1G52220 88 / 2e-22 unknown protein
Potri.014G106400
[exp]
84 / 4e-21 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Potri.002G180400
[exp]
73 / 6e-17 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Potri.002G166800
[exp]
71 / 5e-16 AT4G01150 188 / 6e-62 unknown protein
Potri.014G093900
[exp]
70 / 9e-16 AT4G01150 181 / 3e-59 unknown protein
Potri.005G147801
[exp]
61 / 2e-12 AT4G38100 107 / 1e-29 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002673
[exp]
95 / 3e-25 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Lus10030191
[exp]
94 / 5e-25 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Lus10012739
[exp]
76 / 2e-17 AT4G38100 135 / 3e-40 unknown protein
Lus10012645
[exp]
71 / 7e-16 AT4G01150 212 / 3e-71 unknown protein
Lus10010132
[exp]
71 / 7e-16 AT4G01150 215 / 2e-72 unknown protein
Lus10002647
[exp]
62 / 3e-12 AT4G38100 130 / 5e-38 unknown protein
Lus10003031
[exp]
55 / 4e-10 AT4G01150 153 / 3e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14159 CAAD CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Representative CDS sequence
>Potri.001G184700.2 pacid=42792648 polypeptide=Potri.001G184700.2.p locus=Potri.001G184700 ID=Potri.001G184700.2.v4.1 annot-version=v4.1
ATGGCTTCCATTTATGCAAACTTGCCTTCTCCACCGTTGTTGGTCCATAGTAAAAGGATCCCTTTCAGGACTCTTCAAAAGCTCCCACTTTCTACCATTA
AAGAGAGACAGAACTGTGTTGCTGTTGTCGTGAAGGCTACCGGGGAAAGCTCTGAGTCATCAACCTCCCTCAGCATTGTTAAGTCTGTTCAAAACATTTG
GGACGATTCTGAAGATAGGCTGCCCCTTGTCGGTTTGGGTTTTGCAGCACTGGTAGCTGTTTGGGCATCAGCAAATGTCATCACGGCCGTTGACAAGTTG
CCTGTTGTCCCAAGTGCACTAGAATTCGTTGGCATCCTTTATTCTTCGTGGTTTGTATATCGATATCTTTTGCTCAAACCCAATCGGGAAGAGCTTTTCC
AGATCATTAAGAAGTCGGTTGGAGATATCTTAGGCCAGTGA
AA sequence
>Potri.001G184700.2 pacid=42792648 polypeptide=Potri.001G184700.2.p locus=Potri.001G184700 ID=Potri.001G184700.2.v4.1 annot-version=v4.1
MASIYANLPSPPLLVHSKRIPFRTLQKLPLSTIKERQNCVAVVVKATGESSESSTSLSIVKSVQNIWDDSEDRLPLVGLGFAALVAVWASANVITAVDKL
PVVPSALEFVGILYSSWFVYRYLLLKPNREELFQIIKKSVGDILGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G52220 unknown protein Potri.001G184700
[exp]
0 1
AT5G58250 EMB3143 EMBRYO DEFECTIVE 3143, unknown... Potri.013G161000
[exp]
2.44 0.9731
AT5G19940 Plastid-lipid associated prote... Potri.006G276400
[exp]
3.16 0.9744
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.011G106100
[exp]
4.69 0.9645
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Potri.006G147300
[exp]
8.48 0.9657
AT5G01920 STN8 State transition 8, Protein ki... Potri.016G138500
[exp]
8.94 0.9645
AT1G35340 ATP-dependent protease La (LON... Potri.013G105500
[exp]
9.16 0.9689
AT2G33800 EMB3113 EMBRYO DEFECTIVE 3113, Ribosom... Potri.004G045700
[exp]
10.67 0.9701
AT1G50450 Saccharopine dehydrogenase (.... Potri.009G050100
[exp]
10.95 0.9596
AT4G16410 unknown protein Potri.006G017500
[exp]
12.24 0.9683
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.012G144300
[exp]
12.36 0.9656 Pt-HCF106.2

Potri.001G184700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.