Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20110 287 / 2e-90 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT4G29000 280 / 3e-87 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 216 / 2e-64 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 163 / 1e-45 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 136 / 5e-34 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 127 / 2e-31 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 124 / 6e-30 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 119 / 2e-28 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160400 [exp] 319 / 1e-102 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 267 / 2e-84 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 230 / 6e-68 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.008G156100 [exp] 134 / 2e-33 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 132 / 1e-32 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 127 / 4e-31 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 119 / 2e-28 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 115 / 4e-27 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 101 / 1e-22 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043225 [exp] 289 / 6e-91 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 288 / 9e-91 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 257 / 2e-78 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 239 / 6e-72 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 220 / 5e-64 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 131 / 4e-32 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 124 / 6e-30 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 106 / 3e-24 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 106 / 6e-24 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.001G184800.1 pacid=42792534 polypeptide=Potri.001G184800.1.p locus=Potri.001G184800 ID=Potri.001G184800.1.v4.1 annot-version=v4.1 ATGACATCATTTTTCCCGCCAGAAACGGTTGAATCAGTTAAACGAGAACTAGGCAAATCGGATTTCACGCCGAGAAAACTGGTTTTCACGGAGTTCGGCT TGTCTCCGGTCGTCAGTGCCTCTCCGCTGCATAAGTCGCCTCACGAGAGGCTCCTCTTGCAAACCAAGCTACATGTGCTTCCGCGTTCTCCATTATCCTT TAAGAAGTCAGAGTCTCCTAGAATATCTCTGCCACAGGCTAGAACCAAAATAATTAATGGCACTCCAAAGAGTCATAGGCAGTGTCATTGCAAGCAATCA AAATGCTTAAAGTTGTACTGCGAGTGCTTTGCTTCTGGATCATATTGTGATGAATGCAGTTGTGCTAATTGTCATAATAATGTGGAGAATGAGGATGTGA GGAGAGAAGCTGCTGAATGCATCCTAGAACGTAATCCAAATGCTTTCAAACCAAAAATAACTGGCAGTCCGTGTACTCCTCCAGACGATGGGGATGCGGC AAAAGATGTTTTGGTAATGGCTAAACACATCAAGGGATGCCACTGTAAAAGAACTGGTTGCCTCAAAAAGTATTGTGAGTGCTTTCAAGCAAACATTCTC TGCTCTGAAAATTGCAAATGTGTCAGCTGCAAAAATTTGGAAGGACGTGAGCTAGGAATGGTTGTTACCTCGGAAAATCATTGTAAGACCAAAGCCTACA TTCAGCAGGAAAATGCTAATTCATCTAGTGCTGTTGTATCCTCAAGCCATATCTTCTCTCAAGAATCCAGGAAAAGAACATTTCGAGAACTATTTGATTC AAACATGAGAGATACAGAAATTCATGAGTTTACAAAACATTATGCGGTTAATCCAGTTGGAGTTCATGTTTCAATCCCAACCTTACGTGCTGATTGTGTT TGTCAAATTGCTAGTTCTGCAGCATTGGGCTCTTCAAAGCTTACATACAGATCTCTCTTAGCAGATGCTATTCATCCATTGGACACTAGAGAGCTCTGCT CACTTTTGGTGGTTGTATCAGAAGCTGCAAAGTTTCTTGCTGACGAACATTGCAAGGCACAGATAAAAGAAGTAAAAGAATACCAGATGGCCTGTGATCT TGAGAAAGATTGCAAGAAAGAACCTGATGTTCATCAAGTTGTGCCTCATAACCAATTTCCTGGGAGCCGAACTGATATAACAGTCATGGATAATTCCAGA TCTTGTGACATTGACATGCAGGATGGAGGGCCGTTTTCATCTGAAGAAGATTACTTGATGTGCGACAAGAAAGACAAATTGTTCACAAGATCTGCTTCCC TAGACCAAAATCTGAATCATGGATGCAATGAAAATTTCACGAAGGAGCATGAAAGACTTGTTTTGACATGTTTACGGGATTGTCTTGGAAAGCTCATCGC TTTTGGAACAATGAAAGGTATAGGTCTGCCCTTCCTCTTTCTAAATAGATACAAAAACTACCAGTTTGAAAGCTTGTCAACAATTCAACATTAA
AA sequence Show only first row Show all	>Potri.001G184800.1 pacid=42792534 polypeptide=Potri.001G184800.1.p locus=Potri.001G184800 ID=Potri.001G184800.1.v4.1 annot-version=v4.1 MTSFFPPETVESVKRELGKSDFTPRKLVFTEFGLSPVVSASPLHKSPHERLLLQTKLHVLPRSPLSFKKSESPRISLPQARTKIINGTPKSHRQCHCKQS KCLKLYCECFASGSYCDECSCANCHNNVENEDVRREAAECILERNPNAFKPKITGSPCTPPDDGDAAKDVLVMAKHIKGCHCKRTGCLKKYCECFQANIL CSENCKCVSCKNLEGRELGMVVTSENHCKTKAYIQQENANSSSAVVSSSHIFSQESRKRTFRELFDSNMRDTEIHEFTKHYAVNPVGVHVSIPTLRADCV CQIASSAALGSSKLTYRSLLADAIHPLDTRELCSLLVVVSEAAKFLADEHCKAQIKEVKEYQMACDLEKDCKKEPDVHQVVPHNQFPGSRTDITVMDNSR SCDIDMQDGGPFSSEEDYLMCDKKDKLFTRSASLDQNLNHGCNENFTKEHERLVLTCLRDCLGKLIAFGTMKGIGLPFLFLNRYKNYQFESLSTIQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.001G184800 [exp]	0	1
AT3G01790			Ribosomal protein L13 family p...		Potri.001G334000 [exp]	14.89	0.8349
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Potri.001G209100 [exp]	21.97	0.7888
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G154550 [exp]	22.22	0.7977
AT4G38495			unknown protein		Potri.016G127200 [exp]	26.94	0.7879
AT3G07440			unknown protein		Potri.007G083100 [exp]	37.33	0.7932
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076300 [exp]	39.49	0.7726
					Potri.013G064900 [exp]	46.47	0.7986
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G167550 [exp]	51.84	0.7960
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.016G081200 [exp]	52.76	0.7660
AT3G14470			NB-ARC domain-containing disea...		Potri.013G041800 [exp]	56.48	0.7786

Compare expression of checked genes

Potri.001G184800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.