Plant FIBer expression Database

Potri.001G185050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79830 986 / 0 GC5 golgin candidate 5 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G052100
[exp]
1479 / 0 AT1G79830 944 / 0.0 golgin candidate 5 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037556
[exp]
969 / 0 AT1G79830 910 / 0.0 golgin candidate 5 (.1.2.3.4)
Lus10011437
[exp]
965 / 0 AT1G79830 949 / 0.0 golgin candidate 5 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12325 TMF_TATA_bd TATA element modulatory factor 1 TATA binding
PF12329 TMF_DNA_bd TATA element modulatory factor 1 DNA binding
Representative CDS sequence
>Potri.001G185050.5 pacid=42791877 polypeptide=Potri.001G185050.5.p locus=Potri.001G185050 ID=Potri.001G185050.5.v4.1 annot-version=v4.1
ATGGCTTGGTTTAGCGGGAAAGTCTCGCTAGGGAACTTCCCTGATCTAGCAGGGGCGGTGAATAAGCTCAGTGAGAGCGTCAAGAATATCGAGAAGAATT
TCGACACTGCACTTGGTTTCGAAGATAAACCCGATTCTAGTACCAGCACTGAAGCTTCGGGATTATGGCCAGTTATGTCCTTTATGGGGCAAAAAAGCGA
GGATAGTACAGTTGAATCTTCAGAGAAAACTGTATCTCCACAGAAATCATCAACTGTTGAGGAGAAAGAGTCACAAAATTCTGACACTGAACAAACCACA
GCTTTAGAAGAAAATCAAATGCTTGAGAGAAAAAAAGATGGCGAGCATCTAGAGATTGCTGAGAAAAAAGATGGTGTCATTTCAGACTCTGGCAAAGCTG
AACTCGAATCTAAATTGCAATCAGAACCTAAGGCTGTCGAACCTCCTGAGCTAGATGTCCATGATGTTAAAATACCAGATTCAGCTGATGAATTACAGGG
GAAGGAGATTTCAGAGGTAGGGCCTGCTGAAAATTCAGATACATTGGAGATCAAGTCAGAAGCACCCAGGGTTGATGAAGTCGAGGCTGCTTCCATCTTA
CATAACGACTCACATAATGTGTTTCATGCCGAGAGCATAGATGAACAAGAGACACAAGCTGAGGAGACTGTAGAACAAAGTTCAATTCAAGCTGAGGCAT
CAAGTGATACGCAAGCTGAGGCATCGGATGATGTGCAAGCTGAGGCATCGGATGATGTCCTAGCTGAAGCATCAAGTGATAACCGAGCCGAGGCTTCAAG
TGATACCCAAGCTGAAGCTGCAGTTGATTCATCCTGTTCACAGCCAATAATTAGTGCTGAAGTGAGTGGCATGGCTTGTGAACCCTCCCTGTCCACTGCA
TCTCCCTCAGGTGAGGCTTCAGAAATGGTTTCTGGATCAGTTTCTAAGGTAGACGATGGCAATGATCAGACAGTAGGAGGAGACGAGGGAGTCAATTATG
GCAAAGTTGGCAGTAAAGAGCAACGCCTGAGCTCAGGGTTGAATATATCAGACTCTATAGATTCCATGCTTGAACTAGAGAAGGTGAAGACTGAGATTAA
AATGATGGAAACTGCATTACAAGGTGCTGCAAGGCAAGCTCAGGCAAAGGCTGATGAGATCGCGAAGTTGATGAATGAAAATGAGCACCTGAAAGTTGTT
ATTGGGGAATTGAAGAGAAAAACCAATGATGCAGAAATCGAGTCTTTGAGAGAGGAATACCATCAAAGGGTTTCAACTCTTGAAAGAAAGGTTTATGCTC
TTACAAAGGAAAGAGATACACTTAGGAGAGAGCAGAACAAAAAAAGCGATGCTGCTGCTCTTCTGAAGGAAAAGGATGAAATTATTAATCAGGTTATGGC
TGAAGGTGAAGAGCTTTCAAAAAAGCAGGCTACTCAAGAATCTACTATTAGAAAATTAAGAGCTCAGAATAGAGAGCTTGAAGAAGAAAAGAAAGGTTTG
ATGACCAAAGTTCAGGTGGAAGAGAATAAAGTAGAGAGTATAAAAAAGGACAAGACAACTACAGAGAATTTGCTGCAAGAAACAATAGAAAAACACCAAG
CAGAGCTTTCAGCCCAGAAAGAGTATTATACGGATGCTTTATCTGCATCCAAGAAGGCTGAAGCATTAGCAGAGGCACGTGCTGATAATGAGGCCAGAAC
TGAATTAGAGAGTCATCTAAGAGAGGCAGAGGAACGCGAGACTATGCTAGTTCAGGCACTTGAAGAATTAAGACAAACTTTGAGTAGAAAGGAGCAGGAG
GCTGTTTTTAGAGAGGACATGCTATGCAGGGACATTGAAGATCTTCAAAAATATTATCAAGCAAGTGAACGTCGATGTGAGGAGCTGATTACTCAAGTTC
CTGATTCTACAAGGCCTCTCCTAAGGCAGATTGAAGCCATGCAGGAAACAACAGGTAGAAGGGCTGAGGCCTGGGCTGCTGTGGAGAGATCTCTAAATTC
TCGACTCCAGGAAGCAGAGGCCAAAGCTGCTGTTGCTGAGGAAAGAGAGCAATCTGTGAATAAACGCTTGTCTCAAACATTATCTCGAATTAATGTTCTT
GAAGCGCAGATTTCTTGTCTCAGGACCGAACAAACACAGTTAAGTAGGTCCCTCGAAAAGGAGAGACAGAGAGCAGCTGAAAATAGGCAGGAATACCTTG
CAGCCAAGGAGGAAGCTGACACTCAAGAAGGTCGTGCCAGTCAACTTGAAGCACAAATTAAGGAACTGAGGCAGGAAAACAAGGAAGAGTTACAAGATGC
ATTAACACACAGAGAACTTCTACAACAGGAAATTGAAAGAGAGAAAGCTGCTCGGTTGGAGTTGGAAAGGACAGCTCACGTCCATTCTACTTCTGCATCT
GATCAAACTCCTATTGCAAGGAGCAACTCTGCTTTTGAGAATGGAAATTTAACCCGAAAGCTCTCCACTGCTAGCAGCCTGGGCAGCATGGAAGAGAGCT
ATTATCTGCAAGCATCTCTGGACACATCTGACAGTCTTTCTGAACAGAGAAATTTTGGAGAGGCAACCATGAATCCTTACTACATGAAGAGCATGACACC
TAATGCTTTTGAATCTGCCCTTCGTCAGAAAGAGGGTGAACTTGCATCATATATGTCTCGTTTGGCATCCATGGAATCTGTCCGTGATTCTCTTGCAGAA
GAGTTGGTCAAAATGACATCACAATGTGAGAAATTACGGGCCGAGTCTGCTCTTTTGCCTGGTGTACAGGCAGAACTAGATGGACTGAGGCGAAGGCACT
CTGCTGCCCTGGAGTTAATGGGTGAACGTGATGAGGAGTTGGAGGAACTTCGTGCTGATATTGTAGACTTGAAAGAAATGTACAGAGAGCAAGTAAATTT
GCTTGTCAACAAGATCCAAATATCAAGTACATCCTCTGGCAATGCCTGA
AA sequence
>Potri.001G185050.5 pacid=42791877 polypeptide=Potri.001G185050.5.p locus=Potri.001G185050 ID=Potri.001G185050.5.v4.1 annot-version=v4.1
MAWFSGKVSLGNFPDLAGAVNKLSESVKNIEKNFDTALGFEDKPDSSTSTEASGLWPVMSFMGQKSEDSTVESSEKTVSPQKSSTVEEKESQNSDTEQTT
ALEENQMLERKKDGEHLEIAEKKDGVISDSGKAELESKLQSEPKAVEPPELDVHDVKIPDSADELQGKEISEVGPAENSDTLEIKSEAPRVDEVEAASIL
HNDSHNVFHAESIDEQETQAEETVEQSSIQAEASSDTQAEASDDVQAEASDDVLAEASSDNRAEASSDTQAEAAVDSSCSQPIISAEVSGMACEPSLSTA
SPSGEASEMVSGSVSKVDDGNDQTVGGDEGVNYGKVGSKEQRLSSGLNISDSIDSMLELEKVKTEIKMMETALQGAARQAQAKADEIAKLMNENEHLKVV
IGELKRKTNDAEIESLREEYHQRVSTLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQATQESTIRKLRAQNRELEEEKKGL
MTKVQVEENKVESIKKDKTTTENLLQETIEKHQAELSAQKEYYTDALSASKKAEALAEARADNEARTELESHLREAEERETMLVQALEELRQTLSRKEQE
AVFREDMLCRDIEDLQKYYQASERRCEELITQVPDSTRPLLRQIEAMQETTGRRAEAWAAVERSLNSRLQEAEAKAAVAEEREQSVNKRLSQTLSRINVL
EAQISCLRTEQTQLSRSLEKERQRAAENRQEYLAAKEEADTQEGRASQLEAQIKELRQENKEELQDALTHRELLQQEIEREKAARLELERTAHVHSTSAS
DQTPIARSNSAFENGNLTRKLSTASSLGSMEESYYLQASLDTSDSLSEQRNFGEATMNPYYMKSMTPNAFESALRQKEGELASYMSRLASMESVRDSLAE
ELVKMTSQCEKLRAESALLPGVQAELDGLRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQISSTSSGNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.001G185050
[exp]
0 1
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Potri.005G099800
[exp]
2.00 0.7896
AT5G27970 ARM repeat superfamily protein... Potri.013G035100
[exp]
4.00 0.7733
AT3G60860 SEC7-like guanine nucleotide e... Potri.014G070600
[exp]
4.79 0.8056
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
8.66 0.7894
AT5G62310 IRE INCOMPLETE ROOT HAIR ELONGATIO... Potri.015G129200
[exp]
10.95 0.7585 Pt-IRE.2
AT3G03810 EDA30 embryo sac development arrest ... Potri.013G056200
[exp]
14.96 0.6971
AT3G51050 FG-GAP repeat-containing prote... Potri.005G118300
[exp]
17.14 0.7563
AT1G71410 ARM repeat superfamily protein... Potri.013G098700
[exp]
17.49 0.7191
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
21.42 0.7479
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.010G227100
[exp]
22.36 0.7633

Potri.001G185050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.